Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TNFP01375 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TNFP01375 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
TNFP01375 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TNFP01375 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TNFP01375 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TNFP01375 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TNFP01375 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC14.41□□□□□ -0.1
TNFP01375 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
TNFP01375 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC14.41□□□□□ -0.1
TNFP01375 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC14.41□□□□□ -0.1
TNFP01375 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TNFP01375 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC14.41□□□□□ -0.1
TNFP01375 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC14.41□□□□□ -0.1
TNFP01375 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC14.41□□□□□ -0.1
TNFP01375 SUPT4H1P2-201ENST00000501248 353 ntBASIC14.41□□□□□ -0.1
TNFP01375 NUP210P1-202ENST00000504322 710 ntBASIC14.41□□□□□ -0.1
TNFP01375 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC14.41□□□□□ -0.1
TNFP01375 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC14.41□□□□□ -0.1
TNFP01375 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC14.41□□□□□ -0.1
TNFP01375 CHMP4BP1-201ENST00000556017 588 ntBASIC14.41□□□□□ -0.1
TNFP01375 PAM16-211ENST00000575848 518 ntTSL 3 BASIC14.41□□□□□ -0.1
TNFP01375 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
TNFP01375 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC14.41□□□□□ -0.1
TNFP01375 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
TNFP01375 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TNFP01375 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TNFP01375 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TNFP01375 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC14.41□□□□□ -0.1
TNFP01375 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TNFP01375 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC14.41□□□□□ -0.1
TNFP01375 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
TNFP01375 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TNFP01375 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TNFP01375 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TNFP01375 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
TNFP01375 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
TNFP01375 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
TNFP01375 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC14.41□□□□□ -0.1
TNFP01375 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
TNFP01375 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TNFP01375 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TNFP01375 AC009093.10-201ENST00000641956 1442 ntBASIC14.41□□□□□ -0.1
TNFP01375 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TNFP01375 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.4□□□□□ -0.1
TNFP01375 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TNFP01375 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TNFP01375 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.4□□□□□ -0.1
TNFP01375 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
TNFP01375 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
TNFP01375 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
TNFP01375 FES-204ENST00000414248 2327 ntTSL 2 BASIC14.4□□□□□ -0.1
TNFP01375 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TNFP01375 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TNFP01375 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
TNFP01375 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TNFP01375 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TNFP01375 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
TNFP01375 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC14.4□□□□□ -0.1
TNFP01375 CMC1-204ENST00000423894 549 ntTSL 2 BASIC14.4□□□□□ -0.1
TNFP01375 AC078875.1-201ENST00000431907 724 ntBASIC14.4□□□□□ -0.1
TNFP01375 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC14.4□□□□□ -0.1
TNFP01375 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC14.4□□□□□ -0.1
TNFP01375 IMP3P2-201ENST00000489760 475 ntBASIC14.4□□□□□ -0.1
TNFP01375 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC14.4□□□□□ -0.1
TNFP01375 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC14.4□□□□□ -0.1
TNFP01375 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC14.4□□□□□ -0.1
TNFP01375 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC14.4□□□□□ -0.1
TNFP01375 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC14.4□□□□□ -0.1
TNFP01375 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC14.4□□□□□ -0.1
TNFP01375 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TNFP01375 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TNFP01375 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC14.4□□□□□ -0.1
TNFP01375 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.4□□□□□ -0.1
TNFP01375 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
TNFP01375 FAS-202ENST00000352159 1722 ntTSL 5 BASIC14.4□□□□□ -0.1
TNFP01375 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC14.4□□□□□ -0.1
TNFP01375 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
TNFP01375 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC14.4□□□□□ -0.1
TNFP01375 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TNFP01375 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TNFP01375 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TNFP01375 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
TNFP01375 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC14.39□□□□□ -0.11
TNFP01375 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.39□□□□□ -0.11
TNFP01375 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC14.39□□□□□ -0.11
TNFP01375 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
TNFP01375 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TNFP01375 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TNFP01375 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC14.39□□□□□ -0.11
TNFP01375 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC14.39□□□□□ -0.11
TNFP01375 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
TNFP01375 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TNFP01375 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
TNFP01375 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TNFP01375 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TNFP01375 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TNFP01375 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC14.39□□□□□ -0.11
TNFP01375 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TNFP01375 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms