Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC8.17□□□□□ -1.1
CHKB-CPT1BH3BT56 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
CHKB-CPT1BH3BT56 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC8.17□□□□□ -1.1
CHKB-CPT1BH3BT56 NFASC-201ENST00000339876 10333 ntAPPRIS ALT1 TSL 5 BASIC8.17□□□□□ -1.1
CHKB-CPT1BH3BT56 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC8.17□□□□□ -1.1
CHKB-CPT1BH3BT56 TMPRSS13-201ENST00000430170 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC8.17□□□□□ -1.1
CHKB-CPT1BH3BT56 POLL-202ENST00000339310 2289 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
CHKB-CPT1BH3BT56 GABPB1-203ENST00000380877 4816 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
CHKB-CPT1BH3BT56 DDHD1-203ENST00000395606 12769 ntAPPRIS ALT2 TSL 2 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 NMNAT2-202ENST00000294868 5448 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 AC092139.4-201ENST00000624318 2794 ntBASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 LPP-AS2-201ENST00000605573 2852 ntBASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 BX255923.2-202ENST00000620833 2874 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 DNAH2-202ENST00000570791 2994 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 TBC1D2-204ENST00000375066 3198 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 PARP10-205ENST00000525773 3404 ntAPPRIS ALT2 TSL 2 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 SEPT9-204ENST00000427180 3635 ntTSL 2 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 KPNA3-201ENST00000261667 4474 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 PPIP5K1-205ENST00000381879 5487 ntAPPRIS ALT2 TSL 5 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 LILRA1-201ENST00000251372 1910 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 ENOX1-201ENST00000261488 2982 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 PPARGC1B-202ENST00000360453 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 Telomerase-vert.1-201ENST00000363312 438 ntBASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 LAMB3-202ENST00000367030 3931 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 ISG20-202ENST00000379224 540 ntTSL 3 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 CCDC85C-201ENST00000380243 16393 ntAPPRIS P1 TSL 5 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 OS9-203ENST00000389142 2457 ntTSL 5 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 ABAT-202ENST00000396600 5586 ntAPPRIS P1 TSL 5 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 ADCY4-202ENST00000418030 3353 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 OSBP2-208ENST00000437268 3580 ntTSL 2 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 AC026185.1-201ENST00000445748 174 ntBASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 AL356966.1-201ENST00000454752 2367 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 PDZRN3-208ENST00000479530 2778 ntTSL 2 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 NUDT16P1-203ENST00000513809 620 ntBASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 NLRX1-214ENST00000525863 2850 ntTSL 5 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 TJP2-209ENST00000539225 3838 ntAPPRIS ALT2 TSL 2 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 AKR1C8P-201ENST00000578467 2182 ntTSL 2 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 AC068473.3-202ENST00000589723 4167 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 FHOD3-207ENST00000591635 3035 ntTSL 5 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 TERC-201ENST00000602385 541 ntBASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 GOLGA6L10-208ENST00000619556 4306 ntAPPRIS ALT2 TSL 5 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 DDX3X-203ENST00000457138 5346 ntTSL 2 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 ITGA10-201ENST00000369304 5269 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 PCDHGA10-201ENST00000398610 4617 ntAPPRIS P3 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 PLEKHG5-208ENST00000400915 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 ZNF202-207ENST00000530393 3564 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 CHTF18-201ENST00000262315 3090 ntAPPRIS P2 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 HK3-201ENST00000292432 3066 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 SEPT10-202ENST00000397712 3071 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 BANK1-202ENST00000428908 3044 ntTSL 5 BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 KLK2-202ENST00000358049 2847 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 COG4-202ENST00000393612 2756 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 H3F3B-201ENST00000254810 2705 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 SYT11-201ENST00000368324 5240 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHKB-CPT1BH3BT56 FUBP1-202ENST00000370767 2524 ntTSL 5 BASIC8.15□□□□□ -1.1
CHKB-CPT1BH3BT56 GPR55-205ENST00000622008 2526 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
CHKB-CPT1BH3BT56 ELMOD3-206ENST00000409890 2492 ntAPPRIS P1 TSL 5 BASIC8.15□□□□□ -1.1
CHKB-CPT1BH3BT56 INPP5D-204ENST00000445964 4845 ntAPPRIS P3 TSL 1 (best) BASIC8.15□□□□□ -1.1
CHKB-CPT1BH3BT56 A1CF-203ENST00000373995 2211 ntTSL 2 BASIC8.15□□□□□ -1.1
CHKB-CPT1BH3BT56 C12orf76-205ENST00000548191 2204 ntAPPRIS P1 TSL 2 BASIC8.15□□□□□ -1.1
CHKB-CPT1BH3BT56 AGPAT3-203ENST00000398058 4338 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
CHKB-CPT1BH3BT56 BRD1-202ENST00000404034 4312 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
CHKB-CPT1BH3BT56 TLN2-202ENST00000472902 2116 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
CHKB-CPT1BH3BT56 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC8.15□□□□□ -1.1
CHKB-CPT1BH3BT56 AP000437.1-201ENST00000624057 2085 ntBASIC8.15□□□□□ -1.1
CHKB-CPT1BH3BT56 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC8.15□□□□□ -1.1
CHKB-CPT1BH3BT56 TENM2-207ENST00000520394 8034 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
CHKB-CPT1BH3BT56 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms