Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC14.07□□□□□ -0.16
ATG4BQ9Y4P1 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 RDX-218ENST00000544551 4117 ntTSL 2 BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 GZMB-202ENST00000382540 816 ntTSL 5 BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 MIR1202-201ENST00000408529 83 ntBASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 CTBP2P5-201ENST00000454986 1264 ntBASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 TPT1P11-201ENST00000458482 498 ntBASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 AC022447.6-201ENST00000515522 438 ntBASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 SNX29P1-201ENST00000548357 1007 ntBASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 RHOXF1P1-202ENST00000635473 501 ntBASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 SNX18-202ENST00000343017 3140 ntBASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
ATG4BQ9Y4P1 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 SNX21-203ENST00000372541 771 ntTSL 2 BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 AC004945.1-201ENST00000416738 983 ntBASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 KLF2P4-201ENST00000451959 1225 ntBASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 COX5BP1-201ENST00000507622 393 ntBASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 MIR4683-201ENST00000579659 81 ntBASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 AC073413.1-201ENST00000603927 732 ntBASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 BX088702.1-201ENST00000610784 235 ntBASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 MIR6775-201ENST00000617557 69 ntBASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ATG4BQ9Y4P1 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms