Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 AC106827.1-201ENST00000366454 431 ntBASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 OLA1P2-201ENST00000395519 1264 ntBASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 AC092570.1-201ENST00000414446 469 ntBASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 KRT8P30-201ENST00000432100 650 ntBASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 AC097381.2-201ENST00000510640 859 ntTSL 2 BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 CTBP2P6-201ENST00000526402 1229 ntBASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 KRT8P1-201ENST00000557533 1207 ntBASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 TRMT112P3-201ENST00000580149 358 ntBASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 AC254633.1-201ENST00000606790 345 ntBASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 AC004466.2-201ENST00000614749 516 ntBASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 AC068418.2-201ENST00000577309 3703 ntBASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 FLJ38576-201ENST00000623820 2459 ntBASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 RN7SL288P-201ENST00000490496 291 ntBASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 AP004550.1-201ENST00000532652 514 ntTSL 3 BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 BLOC1S5-205ENST00000543936 368 ntTSL 2 BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 AC104590.1-201ENST00000560813 648 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 AC142086.5-202ENST00000562500 217 ntBASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 HNRNPA1P16-201ENST00000575692 955 ntBASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 AL512324.3-201ENST00000619383 882 ntBASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 ALOX12P2-203ENST00000570921 1945 ntBASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMC1BQ8NDV3 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 COLQ-202ENST00000383786 1482 ntTSL 5 BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 SERPINA1-209ENST00000449399 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms