Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 MVK-214ENST00000629016 1591 ntTSL 5 BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 AC020658.6-201ENST00000623564 1870 ntBASIC14.33□□□□□ -0.12
COL28A1Q2UY09 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL28A1Q2UY09 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 AL354877.1-201ENST00000424412 413 ntBASIC14.32□□□□□ -0.12
COL28A1Q2UY09 PDIA3P2-201ENST00000428073 158 ntBASIC14.32□□□□□ -0.12
COL28A1Q2UY09 AL139008.1-201ENST00000437894 228 ntBASIC14.32□□□□□ -0.12
COL28A1Q2UY09 PIN4P1-201ENST00000451079 396 ntBASIC14.32□□□□□ -0.12
COL28A1Q2UY09 RNMTL1P1-201ENST00000454103 560 ntBASIC14.32□□□□□ -0.12
COL28A1Q2UY09 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 ALG1L13P-202ENST00000519320 584 ntBASIC14.32□□□□□ -0.12
COL28A1Q2UY09 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 AC138466.4-201ENST00000623965 852 ntBASIC14.32□□□□□ -0.12
COL28A1Q2UY09 CDK7-214ENST00000626796 358 ntTSL 5 BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 SBF1P1-201ENST00000444527 5631 ntBASIC14.32□□□□□ -0.12
COL28A1Q2UY09 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL28A1Q2UY09 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 AC007292.2-201ENST00000593524 1812 ntBASIC14.31□□□□□ -0.12
COL28A1Q2UY09 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 AC090616.6-203ENST00000579186 1945 ntBASIC14.31□□□□□ -0.12
COL28A1Q2UY09 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 AL138799.1-201ENST00000448213 1675 ntBASIC14.31□□□□□ -0.12
COL28A1Q2UY09 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 KLF2P2-201ENST00000416807 1039 ntBASIC14.31□□□□□ -0.12
COL28A1Q2UY09 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.31□□□□□ -0.12
COL28A1Q2UY09 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms