Protein–RNA interactions for Protein: Q15768

EFNB3, Ephrin-B3, humanhuman

Predictions only

Length 340 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EFNB3Q15768 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
EFNB3Q15768 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
EFNB3Q15768 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC12.65□□□□□ -0.38
EFNB3Q15768 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
EFNB3Q15768 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
EFNB3Q15768 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
EFNB3Q15768 SKA2-202ENST00000437036 625 ntTSL 2 BASIC12.65□□□□□ -0.38
EFNB3Q15768 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC12.65□□□□□ -0.38
EFNB3Q15768 EIF4HP1-201ENST00000453115 687 ntBASIC12.65□□□□□ -0.38
EFNB3Q15768 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC12.65□□□□□ -0.38
EFNB3Q15768 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC12.65□□□□□ -0.38
EFNB3Q15768 SYT17-208ENST00000568433 812 ntTSL 3 BASIC12.65□□□□□ -0.38
EFNB3Q15768 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
EFNB3Q15768 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
EFNB3Q15768 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC12.65□□□□□ -0.38
EFNB3Q15768 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC12.65□□□□□ -0.38
EFNB3Q15768 AP000346.4-201ENST00000614827 381 ntBASIC12.65□□□□□ -0.38
EFNB3Q15768 AL136295.7-201ENST00000619226 1200 ntBASIC12.65□□□□□ -0.38
EFNB3Q15768 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC12.65□□□□□ -0.38
EFNB3Q15768 AC004923.1-202ENST00000642106 209 ntBASIC12.65□□□□□ -0.38
EFNB3Q15768 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC12.65□□□□□ -0.38
EFNB3Q15768 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
EFNB3Q15768 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC12.65□□□□□ -0.38
EFNB3Q15768 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC12.65□□□□□ -0.38
EFNB3Q15768 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
EFNB3Q15768 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
EFNB3Q15768 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC12.65□□□□□ -0.38
EFNB3Q15768 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
EFNB3Q15768 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
EFNB3Q15768 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
EFNB3Q15768 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
EFNB3Q15768 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
EFNB3Q15768 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
EFNB3Q15768 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC12.65□□□□□ -0.38
EFNB3Q15768 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
EFNB3Q15768 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
EFNB3Q15768 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC12.65□□□□□ -0.39
EFNB3Q15768 AC007292.2-201ENST00000593524 1812 ntBASIC12.65□□□□□ -0.39
EFNB3Q15768 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.39
EFNB3Q15768 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
EFNB3Q15768 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 CELP-203ENST00000624767 2414 ntTSL 5 BASIC12.64□□□□□ -0.39
EFNB3Q15768 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC12.64□□□□□ -0.39
EFNB3Q15768 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC12.64□□□□□ -0.39
EFNB3Q15768 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
EFNB3Q15768 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 AC023908.3-201ENST00000564211 3047 ntBASIC12.64□□□□□ -0.39
EFNB3Q15768 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC12.64□□□□□ -0.39
EFNB3Q15768 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
EFNB3Q15768 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC12.64□□□□□ -0.39
EFNB3Q15768 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 FNTAP2-201ENST00000430308 634 ntBASIC12.64□□□□□ -0.39
EFNB3Q15768 NKAIN1P1-201ENST00000435754 582 ntBASIC12.64□□□□□ -0.39
EFNB3Q15768 RNMTL1P1-201ENST00000454103 560 ntBASIC12.64□□□□□ -0.39
EFNB3Q15768 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC12.64□□□□□ -0.39
EFNB3Q15768 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC12.64□□□□□ -0.39
EFNB3Q15768 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC12.64□□□□□ -0.39
EFNB3Q15768 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC12.64□□□□□ -0.39
EFNB3Q15768 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC12.64□□□□□ -0.39
EFNB3Q15768 AC013355.1-201ENST00000562625 723 ntBASIC12.64□□□□□ -0.39
EFNB3Q15768 IGHV3OR16-16-201ENST00000563644 343 ntBASIC12.64□□□□□ -0.39
EFNB3Q15768 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 NDUFV2P1-201ENST00000596415 907 ntBASIC12.64□□□□□ -0.39
EFNB3Q15768 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
EFNB3Q15768 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC12.64□□□□□ -0.39
EFNB3Q15768 AC009884.2-201ENST00000603110 324 ntBASIC12.64□□□□□ -0.39
EFNB3Q15768 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
EFNB3Q15768 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC12.64□□□□□ -0.39
EFNB3Q15768 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
EFNB3Q15768 AC027601.3-201ENST00000622907 509 ntBASIC12.64□□□□□ -0.39
EFNB3Q15768 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
EFNB3Q15768 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
EFNB3Q15768 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC12.64□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms