Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM4P67936 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TPM4P67936 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM4P67936 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM4P67936 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC16.73■□□□□ 0.27
TPM4P67936 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TPM4P67936 SYNGAP1-208ENST00000629380 9862 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
TPM4P67936 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.72■□□□□ 0.27
TPM4P67936 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
TPM4P67936 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TPM4P67936 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TPM4P67936 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
TPM4P67936 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC16.72■□□□□ 0.27
TPM4P67936 DSCAML1-203ENST00000527706 6099 ntTSL 5 BASIC16.72■□□□□ 0.27
TPM4P67936 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC16.72■□□□□ 0.27
TPM4P67936 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TPM4P67936 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
TPM4P67936 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TPM4P67936 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TPM4P67936 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
TPM4P67936 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TPM4P67936 AC089987.1-201ENST00000551654 2209 ntBASIC16.72■□□□□ 0.27
TPM4P67936 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TPM4P67936 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TPM4P67936 ADGRG6-204ENST00000367609 6887 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
TPM4P67936 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TPM4P67936 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TPM4P67936 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TPM4P67936 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
TPM4P67936 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TPM4P67936 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16.72■□□□□ 0.27
TPM4P67936 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC16.72■□□□□ 0.27
TPM4P67936 RPS15-202ENST00000585665 467 ntTSL 3 BASIC16.72■□□□□ 0.27
TPM4P67936 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TPM4P67936 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TPM4P67936 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC16.72■□□□□ 0.27
TPM4P67936 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC16.72■□□□□ 0.27
TPM4P67936 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TPM4P67936 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TPM4P67936 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TPM4P67936 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC16.72■□□□□ 0.27
TPM4P67936 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TPM4P67936 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
TPM4P67936 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
TPM4P67936 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC16.72■□□□□ 0.27
TPM4P67936 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TPM4P67936 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
TPM4P67936 SEC14L5-201ENST00000251170 6459 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TPM4P67936 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
TPM4P67936 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TPM4P67936 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TPM4P67936 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TPM4P67936 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TPM4P67936 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TPM4P67936 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC16.71■□□□□ 0.27
TPM4P67936 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TPM4P67936 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC16.71■□□□□ 0.27
TPM4P67936 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TPM4P67936 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
TPM4P67936 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
TPM4P67936 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
TPM4P67936 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TPM4P67936 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TPM4P67936 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TPM4P67936 CENPM-205ENST00000404067 905 ntTSL 3 BASIC16.71■□□□□ 0.27
TPM4P67936 CENPM-206ENST00000407253 818 ntTSL 2 BASIC16.71■□□□□ 0.27
TPM4P67936 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
TPM4P67936 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TPM4P67936 POLD2P1-201ENST00000511220 997 ntBASIC16.71■□□□□ 0.27
TPM4P67936 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.71■□□□□ 0.27
TPM4P67936 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC16.71■□□□□ 0.27
TPM4P67936 AC010336.2-201ENST00000564226 506 ntBASIC16.71■□□□□ 0.27
TPM4P67936 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TPM4P67936 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TPM4P67936 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC16.71■□□□□ 0.27
TPM4P67936 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.71■□□□□ 0.27
TPM4P67936 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
TPM4P67936 TCAF1P1-201ENST00000414990 2232 ntBASIC16.71■□□□□ 0.27
TPM4P67936 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TPM4P67936 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
TPM4P67936 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
TPM4P67936 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TPM4P67936 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
TPM4P67936 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TPM4P67936 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC16.71■□□□□ 0.27
TPM4P67936 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TPM4P67936 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.27
TPM4P67936 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
TPM4P67936 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
TPM4P67936 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
TPM4P67936 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TPM4P67936 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
TPM4P67936 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
TPM4P67936 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.26
TPM4P67936 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
TPM4P67936 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TPM4P67936 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TPM4P67936 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC16.7■□□□□ 0.26
TPM4P67936 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TPM4P67936 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms