Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC15.12■□□□□ 0.01
CDH4P55283 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CDH4P55283 MIR4525-201ENST00000580000 75 ntBASIC15.12■□□□□ 0.01
CDH4P55283 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC15.12■□□□□ 0.01
CDH4P55283 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC15.12■□□□□ 0.01
CDH4P55283 AC243960.2-201ENST00000600996 747 ntBASIC15.12■□□□□ 0.01
CDH4P55283 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CDH4P55283 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH4P55283 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH4P55283 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH4P55283 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CDH4P55283 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC15.12■□□□□ 0.01
CDH4P55283 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC15.12■□□□□ 0.01
CDH4P55283 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC15.12■□□□□ 0.01
CDH4P55283 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH4P55283 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH4P55283 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CDH4P55283 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH4P55283 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH4P55283 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CDH4P55283 KRT8P28-201ENST00000433288 1390 ntBASIC15.11■□□□□ 0.01
CDH4P55283 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH4P55283 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH4P55283 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH4P55283 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC15.11■□□□□ 0.01
CDH4P55283 KHSRPP1-201ENST00000427983 1768 ntBASIC15.11■□□□□ 0.01
CDH4P55283 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CDH4P55283 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH4P55283 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH4P55283 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH4P55283 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
CDH4P55283 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC15.11■□□□□ 0.01
CDH4P55283 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH4P55283 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH4P55283 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
CDH4P55283 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC15.11■□□□□ 0.01
CDH4P55283 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH4P55283 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC15.11■□□□□ 0.01
CDH4P55283 AL157407.1-201ENST00000435784 904 ntBASIC15.11■□□□□ 0.01
CDH4P55283 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH4P55283 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC15.11■□□□□ 0.01
CDH4P55283 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC15.11■□□□□ 0.01
CDH4P55283 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC15.11■□□□□ 0.01
CDH4P55283 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC15.11■□□□□ 0.01
CDH4P55283 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC15.11■□□□□ 0.01
CDH4P55283 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC15.11■□□□□ 0.01
CDH4P55283 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC15.11■□□□□ 0.01
CDH4P55283 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC15.11■□□□□ 0.01
CDH4P55283 AC005324.6-201ENST00000587972 613 ntBASIC15.11■□□□□ 0.01
CDH4P55283 BNIP3P13-201ENST00000599968 566 ntBASIC15.11■□□□□ 0.01
CDH4P55283 AC009884.2-201ENST00000603110 324 ntBASIC15.11■□□□□ 0.01
CDH4P55283 AC022748.3-201ENST00000621828 275 ntBASIC15.11■□□□□ 0.01
CDH4P55283 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH4P55283 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH4P55283 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH4P55283 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH4P55283 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH4P55283 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH4P55283 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH4P55283 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC15.11■□□□□ 0.01
CDH4P55283 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH4P55283 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC15.11■□□□□ 0.01
CDH4P55283 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH4P55283 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH4P55283 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH4P55283 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH4P55283 AL008718.2-201ENST00000609206 1313 ntBASIC15.11■□□□□ 0.01
CDH4P55283 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH4P55283 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.11■□□□□ 0.01
CDH4P55283 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC15.11■□□□□ 0.01
CDH4P55283 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC15.11■□□□□ 0.01
CDH4P55283 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH4P55283 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH4P55283 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CDH4P55283 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH4P55283 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
CDH4P55283 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH4P55283 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH4P55283 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH4P55283 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH4P55283 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
CDH4P55283 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH4P55283 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH4P55283 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC15.1■□□□□ 0.01
CDH4P55283 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH4P55283 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH4P55283 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC15.1■□□□□ 0.01
CDH4P55283 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH4P55283 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.1■□□□□ 0.01
CDH4P55283 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
CDH4P55283 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH4P55283 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH4P55283 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH4P55283 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH4P55283 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CDH4P55283 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CDH4P55283 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH4P55283 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH4P55283 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH4P55283 HNRNPA1P27-201ENST00000412087 955 ntBASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms