Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
HMGCS2P54868 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS2P54868 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS2P54868 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC16.94■□□□□ 0.3
HMGCS2P54868 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.94■□□□□ 0.3
HMGCS2P54868 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.94■□□□□ 0.3
HMGCS2P54868 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS2P54868 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC16.94■□□□□ 0.3
HMGCS2P54868 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS2P54868 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS2P54868 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.94■□□□□ 0.3
HMGCS2P54868 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.94■□□□□ 0.3
HMGCS2P54868 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS2P54868 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
HMGCS2P54868 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.94■□□□□ 0.3
HMGCS2P54868 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
HMGCS2P54868 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS2P54868 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS2P54868 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS2P54868 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS2P54868 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS2P54868 Z69890.1-201ENST00000382990 339 ntBASIC16.94■□□□□ 0.3
HMGCS2P54868 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS2P54868 AL627389.1-201ENST00000413508 1182 ntBASIC16.94■□□□□ 0.3
HMGCS2P54868 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
HMGCS2P54868 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC16.94■□□□□ 0.3
HMGCS2P54868 RPL18AP3-201ENST00000462885 528 ntBASIC16.94■□□□□ 0.3
HMGCS2P54868 RN7SL530P-201ENST00000485097 298 ntBASIC16.94■□□□□ 0.3
HMGCS2P54868 AC114947.1-202ENST00000514136 344 ntBASIC16.94■□□□□ 0.3
HMGCS2P54868 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC16.94■□□□□ 0.3
HMGCS2P54868 AC009560.1-201ENST00000620208 434 ntBASIC16.94■□□□□ 0.3
HMGCS2P54868 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS2P54868 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
HMGCS2P54868 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS2P54868 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS2P54868 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC16.94■□□□□ 0.3
HMGCS2P54868 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS2P54868 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC16.94■□□□□ 0.3
HMGCS2P54868 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS2P54868 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS2P54868 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS2P54868 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS2P54868 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
HMGCS2P54868 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS2P54868 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS2P54868 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS2P54868 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
HMGCS2P54868 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS2P54868 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS2P54868 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC16.93■□□□□ 0.3
HMGCS2P54868 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS2P54868 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
HMGCS2P54868 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS2P54868 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC16.93■□□□□ 0.3
HMGCS2P54868 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC16.93■□□□□ 0.3
HMGCS2P54868 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC16.93■□□□□ 0.3
HMGCS2P54868 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS2P54868 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS2P54868 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS2P54868 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC16.93■□□□□ 0.3
HMGCS2P54868 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC16.93■□□□□ 0.3
HMGCS2P54868 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC16.93■□□□□ 0.3
HMGCS2P54868 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC16.93■□□□□ 0.3
HMGCS2P54868 AC087392.5-201ENST00000612517 489 ntBASIC16.93■□□□□ 0.3
HMGCS2P54868 AC084781.1-201ENST00000613737 656 ntBASIC16.93■□□□□ 0.3
HMGCS2P54868 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS2P54868 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS2P54868 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS2P54868 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS2P54868 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS2P54868 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.93■□□□□ 0.3
HMGCS2P54868 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
HMGCS2P54868 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS2P54868 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS2P54868 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS2P54868 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS2P54868 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS2P54868 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS2P54868 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS2P54868 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS2P54868 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
HMGCS2P54868 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.92■□□□□ 0.3
HMGCS2P54868 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS2P54868 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS2P54868 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS2P54868 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC16.92■□□□□ 0.3
HMGCS2P54868 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS2P54868 AC091951.1-201ENST00000512854 2465 ntBASIC16.92■□□□□ 0.3
HMGCS2P54868 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC16.92■□□□□ 0.3
HMGCS2P54868 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
HMGCS2P54868 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
HMGCS2P54868 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS2P54868 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS2P54868 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
HMGCS2P54868 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS2P54868 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS2P54868 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS2P54868 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS2P54868 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS2P54868 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms