Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 AC093510.1-202ENST00000546238 442 ntTSL 3 BASIC16.1■□□□□ 0.17
HTTP42858 AC091588.3-201ENST00000583442 770 ntTSL 3 BASIC16.1■□□□□ 0.17
HTTP42858 AC254633.1-201ENST00000606790 345 ntBASIC16.1■□□□□ 0.17
HTTP42858 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
HTTP42858 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC16.1■□□□□ 0.17
HTTP42858 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HTTP42858 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC16.09■□□□□ 0.17
HTTP42858 AC092135.3-201ENST00000624151 1846 ntBASIC16.09■□□□□ 0.17
HTTP42858 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HTTP42858 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC16.09■□□□□ 0.17
HTTP42858 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
HTTP42858 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HTTP42858 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HTTP42858 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC16.09■□□□□ 0.17
HTTP42858 ASS1P2-201ENST00000439895 1223 ntBASIC16.09■□□□□ 0.17
HTTP42858 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
HTTP42858 CTSH-218ENST00000615999 972 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HTTP42858 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
HTTP42858 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HTTP42858 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
HTTP42858 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
HTTP42858 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
HTTP42858 UBL7-206ENST00000565335 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HTTP42858 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HTTP42858 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HTTP42858 MRPS28-201ENST00000276585 850 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HTTP42858 AL356000.1-201ENST00000441073 1238 ntBASIC16.09■□□□□ 0.17
HTTP42858 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
HTTP42858 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC16.09■□□□□ 0.17
HTTP42858 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC16.09■□□□□ 0.17
HTTP42858 AC026336.4-201ENST00000624565 1050 ntBASIC16.09■□□□□ 0.17
HTTP42858 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
HTTP42858 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HTTP42858 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HTTP42858 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
HTTP42858 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.08■□□□□ 0.17
HTTP42858 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
HTTP42858 AC026471.1-201ENST00000564629 3026 ntBASIC16.08■□□□□ 0.17
HTTP42858 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
HTTP42858 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC16.08■□□□□ 0.17
HTTP42858 RN7SL375P-201ENST00000492442 298 ntBASIC16.08■□□□□ 0.17
HTTP42858 AC120498.7-201ENST00000562876 330 ntBASIC16.08■□□□□ 0.17
HTTP42858 AC020922.4-201ENST00000621389 339 ntBASIC16.08■□□□□ 0.17
HTTP42858 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC16.08■□□□□ 0.17
HTTP42858 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC16.08■□□□□ 0.17
HTTP42858 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
HTTP42858 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.08■□□□□ 0.17
HTTP42858 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
HTTP42858 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.08■□□□□ 0.16
HTTP42858 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.08■□□□□ 0.16
HTTP42858 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HTTP42858 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC16.08■□□□□ 0.16
HTTP42858 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HTTP42858 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC16.08■□□□□ 0.16
HTTP42858 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.08■□□□□ 0.16
HTTP42858 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC16.08■□□□□ 0.16
HTTP42858 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
HTTP42858 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC16.08■□□□□ 0.16
HTTP42858 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC16.08■□□□□ 0.16
HTTP42858 Z82185.1-201ENST00000417792 549 ntTSL 4 BASIC16.08■□□□□ 0.16
HTTP42858 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC16.08■□□□□ 0.16
HTTP42858 AP006248.1-201ENST00000610471 67 ntBASIC16.08■□□□□ 0.16
HTTP42858 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HTTP42858 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC16.08■□□□□ 0.16
HTTP42858 RFPL3-201ENST00000249007 1488 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HTTP42858 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
HTTP42858 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HTTP42858 SF1-209ENST00000433274 2317 ntTSL 2 BASIC16.08■□□□□ 0.16
HTTP42858 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC16.08■□□□□ 0.16
HTTP42858 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC16.08■□□□□ 0.16
HTTP42858 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
HTTP42858 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
HTTP42858 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HTTP42858 TREX1-203ENST00000456089 629 ntTSL 3 BASIC16.08■□□□□ 0.16
HTTP42858 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC16.08■□□□□ 0.16
HTTP42858 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC16.08■□□□□ 0.16
HTTP42858 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC16.08■□□□□ 0.16
HTTP42858 AC087072.1-201ENST00000603727 421 ntBASIC16.08■□□□□ 0.16
HTTP42858 SARS-202ENST00000369923 1882 ntTSL 5 BASIC16.07■□□□□ 0.16
HTTP42858 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC16.07■□□□□ 0.16
HTTP42858 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HTTP42858 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HTTP42858 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HTTP42858 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HTTP42858 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC16.07■□□□□ 0.16
HTTP42858 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.07■□□□□ 0.16
HTTP42858 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.07■□□□□ 0.16
HTTP42858 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HTTP42858 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HTTP42858 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC16.07■□□□□ 0.16
HTTP42858 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC16.07■□□□□ 0.16
HTTP42858 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC16.07■□□□□ 0.16
HTTP42858 AL513165.2-203ENST00000537239 717 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
HTTP42858 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC16.07■□□□□ 0.16
HTTP42858 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC16.07■□□□□ 0.16
HTTP42858 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC16.07■□□□□ 0.16
HTTP42858 SRRM2-AS1-204ENST00000573802 818 ntTSL 2 BASIC16.07■□□□□ 0.16
HTTP42858 AC126755.5-201ENST00000622756 267 ntBASIC16.07■□□□□ 0.16
HTTP42858 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HTTP42858 CLEC10A-206ENST00000576617 1800 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms