Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
SOX3P41225 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SOX3P41225 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC14.05□□□□□ -0.16
SOX3P41225 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC14.05□□□□□ -0.16
SOX3P41225 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
SOX3P41225 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
SOX3P41225 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.05□□□□□ -0.16
SOX3P41225 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
SOX3P41225 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
SOX3P41225 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
SOX3P41225 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC14.05□□□□□ -0.16
SOX3P41225 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
SOX3P41225 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC14.05□□□□□ -0.16
SOX3P41225 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC14.05□□□□□ -0.16
SOX3P41225 AL138709.1-201ENST00000614840 1693 ntBASIC14.05□□□□□ -0.16
SOX3P41225 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SOX3P41225 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SOX3P41225 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SOX3P41225 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
SOX3P41225 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SOX3P41225 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC14.05□□□□□ -0.16
SOX3P41225 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
SOX3P41225 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SOX3P41225 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
SOX3P41225 GZMB-202ENST00000382540 816 ntTSL 5 BASIC14.05□□□□□ -0.16
SOX3P41225 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC14.05□□□□□ -0.16
SOX3P41225 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC14.05□□□□□ -0.16
SOX3P41225 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SOX3P41225 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC14.05□□□□□ -0.16
SOX3P41225 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC14.05□□□□□ -0.16
SOX3P41225 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC14.05□□□□□ -0.16
SOX3P41225 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
SOX3P41225 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SOX3P41225 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC14.05□□□□□ -0.16
SOX3P41225 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
SOX3P41225 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC14.05□□□□□ -0.16
SOX3P41225 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC14.05□□□□□ -0.16
SOX3P41225 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC14.05□□□□□ -0.16
SOX3P41225 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC14.05□□□□□ -0.16
SOX3P41225 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC14.05□□□□□ -0.16
SOX3P41225 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SOX3P41225 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
SOX3P41225 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC14.05□□□□□ -0.16
SOX3P41225 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC14.05□□□□□ -0.16
SOX3P41225 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC14.05□□□□□ -0.16
SOX3P41225 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SOX3P41225 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SOX3P41225 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SOX3P41225 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
SOX3P41225 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC14.05□□□□□ -0.16
SOX3P41225 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SOX3P41225 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SOX3P41225 FOS-202ENST00000535987 1402 ntTSL 2 BASIC14.05□□□□□ -0.16
SOX3P41225 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC14.05□□□□□ -0.16
SOX3P41225 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SOX3P41225 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SOX3P41225 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
SOX3P41225 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
SOX3P41225 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SOX3P41225 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SOX3P41225 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SOX3P41225 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SOX3P41225 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SOX3P41225 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SOX3P41225 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
SOX3P41225 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SOX3P41225 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SOX3P41225 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SOX3P41225 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SOX3P41225 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SOX3P41225 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14.04□□□□□ -0.16
SOX3P41225 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
SOX3P41225 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
SOX3P41225 ACE3P-201ENST00000423435 1973 ntBASIC14.04□□□□□ -0.16
SOX3P41225 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SOX3P41225 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SOX3P41225 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC14.04□□□□□ -0.16
SOX3P41225 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SOX3P41225 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SOX3P41225 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SOX3P41225 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC14.04□□□□□ -0.16
SOX3P41225 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SOX3P41225 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SOX3P41225 GUK1-206ENST00000366723 845 ntTSL 5 BASIC14.04□□□□□ -0.16
SOX3P41225 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
SOX3P41225 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC14.04□□□□□ -0.16
SOX3P41225 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
SOX3P41225 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
SOX3P41225 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC14.04□□□□□ -0.16
SOX3P41225 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SOX3P41225 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
SOX3P41225 AC007274.1-201ENST00000439805 662 ntBASIC14.04□□□□□ -0.16
SOX3P41225 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC14.04□□□□□ -0.16
SOX3P41225 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC14.04□□□□□ -0.16
SOX3P41225 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC14.04□□□□□ -0.16
SOX3P41225 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SOX3P41225 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
SOX3P41225 AP000812.2-201ENST00000538934 718 ntBASIC14.04□□□□□ -0.16
SOX3P41225 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC14.04□□□□□ -0.16
SOX3P41225 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms