Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
CXCL1P09341 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
CXCL1P09341 AC027369.3-201ENST00000530465 3707 ntBASIC11.56□□□□□ -0.56
CXCL1P09341 DHX30-215ENST00000619982 3574 ntAPPRIS ALT1 TSL 5 BASIC11.56□□□□□ -0.56
CXCL1P09341 SLC38A7-201ENST00000219320 4392 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
CXCL1P09341 DCAF13-201ENST00000297579 2642 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
CXCL1P09341 HLA-E-201ENST00000376630 2601 ntAPPRIS P1 BASIC11.56□□□□□ -0.56
CXCL1P09341 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
CXCL1P09341 PCDHA6-201ENST00000378126 3267 ntBASIC11.55□□□□□ -0.56
CXCL1P09341 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
CXCL1P09341 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
CXCL1P09341 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC11.55□□□□□ -0.56
CXCL1P09341 USP17L7-201ENST00000530447 2022 ntAPPRIS P1 BASIC11.55□□□□□ -0.56
CXCL1P09341 NTNG1-204ENST00000370067 4628 ntTSL 5 BASIC11.55□□□□□ -0.56
CXCL1P09341 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CXCL1P09341 LEPROTL1-201ENST00000321250 3173 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CXCL1P09341 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
CXCL1P09341 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CXCL1P09341 ARGLU1-203ENST00000400198 3390 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
CXCL1P09341 NR1H3-217ENST00000467728 2731 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CXCL1P09341 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC11.55□□□□□ -0.56
CXCL1P09341 NCDN-201ENST00000356090 3433 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CXCL1P09341 NCSTN-201ENST00000294785 2936 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CXCL1P09341 VENTX-201ENST00000325980 2911 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CXCL1P09341 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC11.55□□□□□ -0.56
CXCL1P09341 REXO1L4P-201ENST00000605109 1937 ntBASIC11.55□□□□□ -0.56
CXCL1P09341 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
CXCL1P09341 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
CXCL1P09341 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC11.55□□□□□ -0.56
CXCL1P09341 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CXCL1P09341 HERC3-203ENST00000407637 2634 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
CXCL1P09341 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CXCL1P09341 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CXCL1P09341 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CXCL1P09341 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
CXCL1P09341 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC11.55□□□□□ -0.56
CXCL1P09341 CBR1-202ENST00000399191 838 ntTSL 3 BASIC11.55□□□□□ -0.56
CXCL1P09341 PP14571-201ENST00000404327 934 ntTSL 2 BASIC11.55□□□□□ -0.56
CXCL1P09341 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC11.55□□□□□ -0.56
CXCL1P09341 AC098831.1-202ENST00000438821 336 ntBASIC11.55□□□□□ -0.56
CXCL1P09341 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC11.55□□□□□ -0.56
CXCL1P09341 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC11.55□□□□□ -0.56
CXCL1P09341 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC11.55□□□□□ -0.56
CXCL1P09341 AC135782.3-201ENST00000562782 2105 ntBASIC11.55□□□□□ -0.56
CXCL1P09341 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC11.55□□□□□ -0.56
CXCL1P09341 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC11.55□□□□□ -0.56
CXCL1P09341 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC11.55□□□□□ -0.56
CXCL1P09341 VPS51-217ENST00000639871 243 ntTSL 5 BASIC11.55□□□□□ -0.56
CXCL1P09341 HNRNPLL-209ENST00000449105 4173 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CXCL1P09341 ZNF200-205ENST00000431561 3348 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
CXCL1P09341 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
CXCL1P09341 SMPDL3B-206ENST00000549094 1611 ntTSL 5 BASIC11.55□□□□□ -0.56
CXCL1P09341 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC11.55□□□□□ -0.56
CXCL1P09341 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
CXCL1P09341 DGKZ-216ENST00000528615 2692 ntTSL 5 BASIC11.55□□□□□ -0.56
CXCL1P09341 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC11.55□□□□□ -0.56
CXCL1P09341 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
CXCL1P09341 GOPC-202ENST00000368498 4450 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
CXCL1P09341 MAD1L1-201ENST00000265854 2718 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CXCL1P09341 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CXCL1P09341 AC090643.2-201ENST00000623442 2029 ntBASIC11.55□□□□□ -0.56
CXCL1P09341 FUT3-207ENST00000589620 2239 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CXCL1P09341 SAP30BP-202ENST00000355423 2439 ntTSL 2 BASIC11.55□□□□□ -0.56
CXCL1P09341 IKBKB-218ENST00000520835 2403 ntTSL 2 BASIC11.55□□□□□ -0.56
CXCL1P09341 PERM1-202ENST00000433179 3340 ntAPPRIS P2 TSL 5 BASIC11.55□□□□□ -0.56
CXCL1P09341 INTS13-201ENST00000261191 2974 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CXCL1P09341 CARS-214ENST00000529772 2637 ntTSL 2 BASIC11.55□□□□□ -0.56
CXCL1P09341 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC11.55□□□□□ -0.56
CXCL1P09341 ZNF683-205ENST00000436292 1712 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
CXCL1P09341 GPR107-208ENST00000610997 2813 ntTSL 5 BASIC11.55□□□□□ -0.56
CXCL1P09341 WTH3DI-201ENST00000623617 3032 ntAPPRIS P1 BASIC11.54□□□□□ -0.56
CXCL1P09341 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
CXCL1P09341 CYP4F24P-201ENST00000586049 1580 ntBASIC11.54□□□□□ -0.56
CXCL1P09341 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC11.54□□□□□ -0.56
CXCL1P09341 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC11.54□□□□□ -0.56
CXCL1P09341 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC11.54□□□□□ -0.56
CXCL1P09341 ELP4-203ENST00000395934 1961 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
CXCL1P09341 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CXCL1P09341 AC005394.2-201ENST00000592347 3113 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
CXCL1P09341 BHLHE40-AS1-204ENST00000620618 2355 ntTSL 2 BASIC11.54□□□□□ -0.56
CXCL1P09341 STK25-235ENST00000543554 2556 ntTSL 2 BASIC11.54□□□□□ -0.56
CXCL1P09341 COG6-202ENST00000416691 5257 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
CXCL1P09341 TSPAN31-201ENST00000257910 1849 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CXCL1P09341 AMOTL2-202ENST00000422605 4335 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
CXCL1P09341 FAM90A11P-201ENST00000518378 2218 ntBASIC11.54□□□□□ -0.56
CXCL1P09341 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CXCL1P09341 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CXCL1P09341 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC11.54□□□□□ -0.56
CXCL1P09341 SYS1-203ENST00000414310 795 ntTSL 3 BASIC11.54□□□□□ -0.56
CXCL1P09341 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
CXCL1P09341 PPIE-208ENST00000470213 927 ntTSL 3 BASIC11.54□□□□□ -0.56
CXCL1P09341 AC079776.4-201ENST00000511039 504 ntBASIC11.54□□□□□ -0.56
CXCL1P09341 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC11.54□□□□□ -0.56
CXCL1P09341 RARRES2P8-201ENST00000566335 367 ntBASIC11.54□□□□□ -0.56
CXCL1P09341 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
CXCL1P09341 COQ9-214ENST00000567933 882 ntTSL 3 BASIC11.54□□□□□ -0.56
CXCL1P09341 ARL16-209ENST00000573715 763 ntTSL 3 BASIC11.54□□□□□ -0.56
CXCL1P09341 ARL16-211ENST00000576135 694 ntTSL 3 BASIC11.54□□□□□ -0.56
CXCL1P09341 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC11.54□□□□□ -0.56
CXCL1P09341 AC068137.2-201ENST00000605408 478 ntBASIC11.54□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms