Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC14.55□□□□□ -0.08
SIX3O95343 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SIX3O95343 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
SIX3O95343 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
SIX3O95343 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
SIX3O95343 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
SIX3O95343 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC14.55□□□□□ -0.08
SIX3O95343 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
SIX3O95343 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SIX3O95343 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
SIX3O95343 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC14.55□□□□□ -0.08
SIX3O95343 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SIX3O95343 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SIX3O95343 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
SIX3O95343 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SIX3O95343 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
SIX3O95343 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SIX3O95343 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SIX3O95343 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SIX3O95343 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SIX3O95343 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SIX3O95343 AC016397.2-201ENST00000624848 1985 ntBASIC14.54□□□□□ -0.08
SIX3O95343 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC14.54□□□□□ -0.08
SIX3O95343 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
SIX3O95343 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SIX3O95343 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SIX3O95343 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
SIX3O95343 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
SIX3O95343 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
SIX3O95343 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
SIX3O95343 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC14.54□□□□□ -0.08
SIX3O95343 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SIX3O95343 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
SIX3O95343 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
SIX3O95343 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SIX3O95343 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SIX3O95343 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SIX3O95343 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SIX3O95343 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SIX3O95343 ACKR1-201ENST00000368121 1240 ntBASIC14.54□□□□□ -0.08
SIX3O95343 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
SIX3O95343 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
SIX3O95343 PGGT1BP2-201ENST00000398621 1028 ntBASIC14.54□□□□□ -0.08
SIX3O95343 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC14.54□□□□□ -0.08
SIX3O95343 TLE1P1-201ENST00000422965 589 ntBASIC14.54□□□□□ -0.08
SIX3O95343 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC14.54□□□□□ -0.08
SIX3O95343 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SIX3O95343 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC14.54□□□□□ -0.08
SIX3O95343 AP001063.1-201ENST00000568332 529 ntBASIC14.54□□□□□ -0.08
SIX3O95343 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
SIX3O95343 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC14.54□□□□□ -0.08
SIX3O95343 AC092364.2-202ENST00000597012 1073 ntBASIC14.54□□□□□ -0.08
SIX3O95343 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC14.54□□□□□ -0.08
SIX3O95343 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC14.54□□□□□ -0.08
SIX3O95343 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
SIX3O95343 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SIX3O95343 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SIX3O95343 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SIX3O95343 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC14.54□□□□□ -0.08
SIX3O95343 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC14.54□□□□□ -0.08
SIX3O95343 AC090505.1-201ENST00000430515 1834 ntBASIC14.54□□□□□ -0.08
SIX3O95343 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC14.54□□□□□ -0.08
SIX3O95343 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SIX3O95343 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SIX3O95343 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.54□□□□□ -0.08
SIX3O95343 MYADML-201ENST00000474610 2147 ntBASIC14.54□□□□□ -0.08
SIX3O95343 MST1P2-201ENST00000457982 2291 ntBASIC14.54□□□□□ -0.08
SIX3O95343 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
SIX3O95343 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC14.54□□□□□ -0.08
SIX3O95343 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC14.54□□□□□ -0.08
SIX3O95343 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SIX3O95343 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SIX3O95343 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC14.53□□□□□ -0.08
SIX3O95343 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SIX3O95343 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SIX3O95343 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
SIX3O95343 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
SIX3O95343 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SIX3O95343 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC14.53□□□□□ -0.08
SIX3O95343 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SIX3O95343 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC14.53□□□□□ -0.08
SIX3O95343 AC011474.4-201ENST00000623523 2076 ntBASIC14.53□□□□□ -0.08
SIX3O95343 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SIX3O95343 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SIX3O95343 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SIX3O95343 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
SIX3O95343 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
SIX3O95343 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SIX3O95343 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
SIX3O95343 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC14.53□□□□□ -0.08
SIX3O95343 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SIX3O95343 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC14.53□□□□□ -0.08
SIX3O95343 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
SIX3O95343 AL138725.1-201ENST00000407347 1314 ntBASIC14.53□□□□□ -0.08
SIX3O95343 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SIX3O95343 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SIX3O95343 NSL1-201ENST00000366976 722 ntTSL 2 BASIC14.53□□□□□ -0.08
SIX3O95343 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC14.53□□□□□ -0.08
SIX3O95343 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC14.53□□□□□ -0.08
SIX3O95343 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms