Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
SMC4Q9NTJ3 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 MIR600HG-201ENST00000449175 5984 ntBASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 MPV17-206ENST00000402722 827 ntTSL 3 BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 GPR53P-205ENST00000457298 1084 ntBASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SMC4Q9NTJ3 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 AC104989.1-201ENST00000519711 778 ntBASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 AC015802.1-201ENST00000588104 1449 ntBASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 MIR6775-201ENST00000617557 69 ntBASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 AC002472.3-201ENST00000640124 621 ntBASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMC4Q9NTJ3 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 KRT8P4-201ENST00000509735 1454 ntBASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
SMC4Q9NTJ3 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms