Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 AC006001.1-201ENST00000325130 474 ntBASIC15.86■□□□□ 0.13
SIX2Q9NPC8 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 AC007551.1-201ENST00000457394 519 ntBASIC15.86■□□□□ 0.13
SIX2Q9NPC8 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 RPL8-205ENST00000527914 551 ntTSL 3 BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 RN7SL713P-201ENST00000582127 302 ntBASIC15.86■□□□□ 0.13
SIX2Q9NPC8 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 BEND3P1-201ENST00000421591 1944 ntBASIC15.86■□□□□ 0.13
SIX2Q9NPC8 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SIX2Q9NPC8 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 CICP4-201ENST00000447359 2812 ntBASIC15.85■□□□□ 0.13
SIX2Q9NPC8 KRT8P24-201ENST00000560290 1559 ntBASIC15.85■□□□□ 0.13
SIX2Q9NPC8 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 ARSEP1-201ENST00000420443 635 ntBASIC15.85■□□□□ 0.13
SIX2Q9NPC8 NME2P1-201ENST00000426182 414 ntBASIC15.85■□□□□ 0.13
SIX2Q9NPC8 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 CDC23-208ENST00000505120 455 ntTSL 3 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 RPL28-206ENST00000558752 671 ntTSL 3 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 C2orf69P2-201ENST00000562032 1123 ntBASIC15.85■□□□□ 0.13
SIX2Q9NPC8 MIR3197-201ENST00000582241 73 ntBASIC15.85■□□□□ 0.13
SIX2Q9NPC8 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC15.85■□□□□ 0.13
SIX2Q9NPC8 AC138951.2-201ENST00000623455 1161 ntBASIC15.85■□□□□ 0.13
SIX2Q9NPC8 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 AC068587.6-202ENST00000641839 5619 ntBASIC15.85■□□□□ 0.13
SIX2Q9NPC8 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
SIX2Q9NPC8 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 TCAM1P-207ENST00000485295 1537 ntBASIC15.84■□□□□ 0.13
SIX2Q9NPC8 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms