Protein–RNA interactions for Protein: Q9BY42

RTFDC1, Protein RTF2 homolog, humanhuman

Predicted RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1Q9BY42 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
RTFDC1Q9BY42 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RTFDC1Q9BY42 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
RTFDC1Q9BY42 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
RTFDC1Q9BY42 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.75■□□□□ 0.43
RTFDC1Q9BY42 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 DPY19L2P5-201ENST00000456300 331 ntBASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 LINC00634-202ENST00000505157 222 ntBASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 AC026410.1-201ENST00000507366 1101 ntBASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 RNA5SP417-201ENST00000516459 108 ntBASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 AC138701.2-201ENST00000553634 226 ntBASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 MIR2392-201ENST00000584881 84 ntBASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 LINC00431-202ENST00000636375 159 ntBASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTFDC1Q9BY42 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 RPL18AP8-201ENST00000486071 528 ntBASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 AC073347.1-201ENST00000421633 2643 ntBASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
RTFDC1Q9BY42 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RTFDC1Q9BY42 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
RTFDC1Q9BY42 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
RTFDC1Q9BY42 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC17.72■□□□□ 0.43
RTFDC1Q9BY42 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RTFDC1Q9BY42 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
RTFDC1Q9BY42 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.72■□□□□ 0.43
RTFDC1Q9BY42 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
RTFDC1Q9BY42 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
RTFDC1Q9BY42 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RTFDC1Q9BY42 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
RTFDC1Q9BY42 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC17.72■□□□□ 0.43
RTFDC1Q9BY42 KHSRPP1-201ENST00000427983 1768 ntBASIC17.72■□□□□ 0.43
RTFDC1Q9BY42 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC17.72■□□□□ 0.43
RTFDC1Q9BY42 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RTFDC1Q9BY42 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RTFDC1Q9BY42 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RTFDC1Q9BY42 AC073869.2-201ENST00000417338 1026 ntBASIC17.72■□□□□ 0.43
RTFDC1Q9BY42 RN7SL277P-201ENST00000481521 288 ntBASIC17.72■□□□□ 0.43
RTFDC1Q9BY42 AC084752.1-201ENST00000509766 622 ntBASIC17.72■□□□□ 0.43
RTFDC1Q9BY42 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RTFDC1Q9BY42 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
RTFDC1Q9BY42 DRG2-220ENST00000583355 891 ntTSL 3 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms