Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ECHDC3Q96DC8 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC14.79□□□□□ -0.04
ECHDC3Q96DC8 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
ECHDC3Q96DC8 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
ECHDC3Q96DC8 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
ECHDC3Q96DC8 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
ECHDC3Q96DC8 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC14.79□□□□□ -0.04
ECHDC3Q96DC8 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
ECHDC3Q96DC8 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 AC020907.1-201ENST00000616460 1350 ntBASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 AL008718.2-201ENST00000609206 1313 ntBASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 RNMTL1P1-201ENST00000454103 560 ntBASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 AC021723.1-201ENST00000486306 515 ntBASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 AC113367.3-201ENST00000508316 1912 ntBASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
ECHDC3Q96DC8 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC14.77□□□□□ -0.04
ECHDC3Q96DC8 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
ECHDC3Q96DC8 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
ECHDC3Q96DC8 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
ECHDC3Q96DC8 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC14.77□□□□□ -0.04
ECHDC3Q96DC8 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
ECHDC3Q96DC8 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
ECHDC3Q96DC8 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
ECHDC3Q96DC8 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC14.77□□□□□ -0.04
ECHDC3Q96DC8 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
ECHDC3Q96DC8 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
ECHDC3Q96DC8 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
ECHDC3Q96DC8 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
ECHDC3Q96DC8 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
ECHDC3Q96DC8 MYADML-201ENST00000474610 2147 ntBASIC14.77□□□□□ -0.04
ECHDC3Q96DC8 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
ECHDC3Q96DC8 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
ECHDC3Q96DC8 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
ECHDC3Q96DC8 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
ECHDC3Q96DC8 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
ECHDC3Q96DC8 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
ECHDC3Q96DC8 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
ECHDC3Q96DC8 DPM3-202ENST00000368399 517 ntBASIC14.77□□□□□ -0.05
ECHDC3Q96DC8 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
ECHDC3Q96DC8 MIR1247-201ENST00000408206 136 ntBASIC14.77□□□□□ -0.05
ECHDC3Q96DC8 HNRNPA1P27-201ENST00000412087 955 ntBASIC14.77□□□□□ -0.05
ECHDC3Q96DC8 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC14.77□□□□□ -0.05
ECHDC3Q96DC8 TPT1P11-201ENST00000458482 498 ntBASIC14.77□□□□□ -0.05
ECHDC3Q96DC8 OARD1-212ENST00000482515 832 ntTSL 2 BASIC14.77□□□□□ -0.05
ECHDC3Q96DC8 AC091804.1-201ENST00000486888 567 ntBASIC14.77□□□□□ -0.05
ECHDC3Q96DC8 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC14.77□□□□□ -0.05
ECHDC3Q96DC8 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
ECHDC3Q96DC8 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
ECHDC3Q96DC8 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
ECHDC3Q96DC8 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC14.77□□□□□ -0.05
ECHDC3Q96DC8 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
ECHDC3Q96DC8 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC14.77□□□□□ -0.05
ECHDC3Q96DC8 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
ECHDC3Q96DC8 NKG7-204ENST00000595217 816 ntTSL 2 BASIC14.77□□□□□ -0.05
ECHDC3Q96DC8 KC6-205ENST00000599934 556 ntTSL 4 BASIC14.77□□□□□ -0.05
ECHDC3Q96DC8 AC243960.2-201ENST00000600996 747 ntBASIC14.77□□□□□ -0.05
ECHDC3Q96DC8 AC009884.2-201ENST00000603110 324 ntBASIC14.77□□□□□ -0.05
ECHDC3Q96DC8 PCBP2-OT1-201ENST00000634357 590 ntBASIC14.77□□□□□ -0.05
ECHDC3Q96DC8 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
ECHDC3Q96DC8 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC14.77□□□□□ -0.05
ECHDC3Q96DC8 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
ECHDC3Q96DC8 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 182.7 ms