Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
SKA3Q8IX90 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SKA3Q8IX90 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC13.23□□□□□ -0.29
SKA3Q8IX90 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
SKA3Q8IX90 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SKA3Q8IX90 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC13.23□□□□□ -0.29
SKA3Q8IX90 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SKA3Q8IX90 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SKA3Q8IX90 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SKA3Q8IX90 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SKA3Q8IX90 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SKA3Q8IX90 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SKA3Q8IX90 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC13.23□□□□□ -0.29
SKA3Q8IX90 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
SKA3Q8IX90 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
SKA3Q8IX90 GAPDHP21-201ENST00000450301 1010 ntBASIC13.23□□□□□ -0.29
SKA3Q8IX90 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
SKA3Q8IX90 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC13.23□□□□□ -0.29
SKA3Q8IX90 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SKA3Q8IX90 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC13.23□□□□□ -0.29
SKA3Q8IX90 AC004466.1-201ENST00000599515 1080 ntBASIC13.23□□□□□ -0.29
SKA3Q8IX90 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
SKA3Q8IX90 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC13.23□□□□□ -0.29
SKA3Q8IX90 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SKA3Q8IX90 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
SKA3Q8IX90 AL138709.1-201ENST00000614840 1693 ntBASIC13.23□□□□□ -0.29
SKA3Q8IX90 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SKA3Q8IX90 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SKA3Q8IX90 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC13.23□□□□□ -0.29
SKA3Q8IX90 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
SKA3Q8IX90 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC13.23□□□□□ -0.29
SKA3Q8IX90 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC13.23□□□□□ -0.29
SKA3Q8IX90 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SKA3Q8IX90 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC13.23□□□□□ -0.29
SKA3Q8IX90 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC13.23□□□□□ -0.29
SKA3Q8IX90 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
SKA3Q8IX90 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SKA3Q8IX90 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
SKA3Q8IX90 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
SKA3Q8IX90 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SKA3Q8IX90 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
SKA3Q8IX90 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
SKA3Q8IX90 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
SKA3Q8IX90 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC13.22□□□□□ -0.29
SKA3Q8IX90 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SKA3Q8IX90 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC13.22□□□□□ -0.29
SKA3Q8IX90 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC13.22□□□□□ -0.29
SKA3Q8IX90 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
SKA3Q8IX90 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
SKA3Q8IX90 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SKA3Q8IX90 AC018665.1-201ENST00000622927 1362 ntBASIC13.22□□□□□ -0.29
SKA3Q8IX90 AC018529.2-202ENST00000611482 3087 ntBASIC13.22□□□□□ -0.29
SKA3Q8IX90 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC13.22□□□□□ -0.29
SKA3Q8IX90 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
SKA3Q8IX90 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SKA3Q8IX90 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC13.22□□□□□ -0.29
SKA3Q8IX90 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
SKA3Q8IX90 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
SKA3Q8IX90 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
SKA3Q8IX90 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SKA3Q8IX90 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC13.22□□□□□ -0.29
SKA3Q8IX90 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC13.22□□□□□ -0.29
SKA3Q8IX90 AC092933.1-201ENST00000393644 945 ntBASIC13.22□□□□□ -0.29
SKA3Q8IX90 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC13.22□□□□□ -0.29
SKA3Q8IX90 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC13.22□□□□□ -0.29
SKA3Q8IX90 FO681548.1-201ENST00000455617 1132 ntBASIC13.22□□□□□ -0.29
SKA3Q8IX90 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC13.22□□□□□ -0.29
SKA3Q8IX90 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SKA3Q8IX90 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SKA3Q8IX90 RBM7-207ENST00000544582 692 ntTSL 3 BASIC13.22□□□□□ -0.29
SKA3Q8IX90 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC13.22□□□□□ -0.29
SKA3Q8IX90 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
SKA3Q8IX90 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC13.22□□□□□ -0.29
SKA3Q8IX90 AL022328.1-201ENST00000610050 478 ntBASIC13.22□□□□□ -0.29
SKA3Q8IX90 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC13.22□□□□□ -0.29
SKA3Q8IX90 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SKA3Q8IX90 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC13.22□□□□□ -0.29
SKA3Q8IX90 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SKA3Q8IX90 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SKA3Q8IX90 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
SKA3Q8IX90 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC13.22□□□□□ -0.29
SKA3Q8IX90 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
SKA3Q8IX90 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SKA3Q8IX90 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SKA3Q8IX90 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
SKA3Q8IX90 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC13.22□□□□□ -0.29
SKA3Q8IX90 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SKA3Q8IX90 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC13.22□□□□□ -0.29
SKA3Q8IX90 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC13.22□□□□□ -0.29
SKA3Q8IX90 AC018442.1-201ENST00000421439 2061 ntBASIC13.22□□□□□ -0.29
SKA3Q8IX90 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SKA3Q8IX90 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
SKA3Q8IX90 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC13.22□□□□□ -0.29
SKA3Q8IX90 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC13.22□□□□□ -0.29
SKA3Q8IX90 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SKA3Q8IX90 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SKA3Q8IX90 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SKA3Q8IX90 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SKA3Q8IX90 LINC00552-201ENST00000625151 2579 ntBASIC13.22□□□□□ -0.29
SKA3Q8IX90 FOS-202ENST00000535987 1402 ntTSL 2 BASIC13.22□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms