Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PKNOX1P55347 ADAMTS7P1-201ENST00000613213 4793 ntBASIC14.66□□□□□ -0.06
PKNOX1P55347 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PKNOX1P55347 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC14.66□□□□□ -0.06
PKNOX1P55347 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PKNOX1P55347 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PKNOX1P55347 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC14.66□□□□□ -0.06
PKNOX1P55347 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PKNOX1P55347 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PKNOX1P55347 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
PKNOX1P55347 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
PKNOX1P55347 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PKNOX1P55347 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PKNOX1P55347 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
PKNOX1P55347 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC14.65□□□□□ -0.06
PKNOX1P55347 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
PKNOX1P55347 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PKNOX1P55347 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC14.65□□□□□ -0.06
PKNOX1P55347 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC14.65□□□□□ -0.06
PKNOX1P55347 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PKNOX1P55347 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
PKNOX1P55347 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
PKNOX1P55347 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
PKNOX1P55347 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PKNOX1P55347 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PKNOX1P55347 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PKNOX1P55347 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
PKNOX1P55347 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
PKNOX1P55347 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
PKNOX1P55347 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
PKNOX1P55347 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
PKNOX1P55347 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC14.65□□□□□ -0.06
PKNOX1P55347 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PKNOX1P55347 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC14.65□□□□□ -0.06
PKNOX1P55347 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC14.65□□□□□ -0.06
PKNOX1P55347 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
PKNOX1P55347 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC14.65□□□□□ -0.06
PKNOX1P55347 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
PKNOX1P55347 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC14.65□□□□□ -0.06
PKNOX1P55347 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
PKNOX1P55347 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.65□□□□□ -0.06
PKNOX1P55347 AL139094.1-201ENST00000405549 1188 ntBASIC14.65□□□□□ -0.06
PKNOX1P55347 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PKNOX1P55347 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.65□□□□□ -0.06
PKNOX1P55347 AC022447.6-201ENST00000515522 438 ntBASIC14.65□□□□□ -0.06
PKNOX1P55347 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC14.65□□□□□ -0.06
PKNOX1P55347 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC14.65□□□□□ -0.06
PKNOX1P55347 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.06
PKNOX1P55347 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
PKNOX1P55347 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PKNOX1P55347 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
PKNOX1P55347 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC14.65□□□□□ -0.06
PKNOX1P55347 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
PKNOX1P55347 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC14.65□□□□□ -0.06
PKNOX1P55347 MX1-218ENST00000619682 1980 ntTSL 5 BASIC14.65□□□□□ -0.06
PKNOX1P55347 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PKNOX1P55347 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PKNOX1P55347 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PKNOX1P55347 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
PKNOX1P55347 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
PKNOX1P55347 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
PKNOX1P55347 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
PKNOX1P55347 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC14.65□□□□□ -0.06
PKNOX1P55347 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC14.65□□□□□ -0.06
PKNOX1P55347 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC14.65□□□□□ -0.06
PKNOX1P55347 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
PKNOX1P55347 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
PKNOX1P55347 FUK-202ENST00000378912 3925 ntTSL 2 BASIC14.64□□□□□ -0.07
PKNOX1P55347 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PKNOX1P55347 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC14.64□□□□□ -0.07
PKNOX1P55347 LSS-211ENST00000522411 2523 ntTSL 2 BASIC14.64□□□□□ -0.07
PKNOX1P55347 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PKNOX1P55347 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PKNOX1P55347 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC14.64□□□□□ -0.07
PKNOX1P55347 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PKNOX1P55347 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
PKNOX1P55347 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PKNOX1P55347 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PKNOX1P55347 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PKNOX1P55347 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PKNOX1P55347 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
PKNOX1P55347 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PKNOX1P55347 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PKNOX1P55347 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC14.64□□□□□ -0.07
PKNOX1P55347 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PKNOX1P55347 TEX30-203ENST00000376022 828 ntTSL 2 BASIC14.64□□□□□ -0.07
PKNOX1P55347 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PKNOX1P55347 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14.64□□□□□ -0.07
PKNOX1P55347 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PKNOX1P55347 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC14.64□□□□□ -0.07
PKNOX1P55347 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.64□□□□□ -0.07
PKNOX1P55347 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PKNOX1P55347 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PKNOX1P55347 DUX4L47-201ENST00000566374 394 ntBASIC14.64□□□□□ -0.07
PKNOX1P55347 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC14.64□□□□□ -0.07
PKNOX1P55347 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC14.64□□□□□ -0.07
PKNOX1P55347 AL390955.2-201ENST00000603032 514 ntBASIC14.64□□□□□ -0.07
PKNOX1P55347 AC007431.3-201ENST00000623221 587 ntBASIC14.64□□□□□ -0.07
PKNOX1P55347 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.64□□□□□ -0.07
PKNOX1P55347 AL603764.1-201ENST00000636452 321 ntBASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms