Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC12.25□□□□□ -0.45
NKX2-1P43699 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC12.25□□□□□ -0.45
NKX2-1P43699 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
NKX2-1P43699 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
NKX2-1P43699 SLC6A6P1-201ENST00000413933 1850 ntBASIC12.25□□□□□ -0.45
NKX2-1P43699 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
NKX2-1P43699 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
NKX2-1P43699 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
NKX2-1P43699 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
NKX2-1P43699 AL157414.3-201ENST00000624276 1954 ntBASIC12.25□□□□□ -0.45
NKX2-1P43699 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC12.25□□□□□ -0.45
NKX2-1P43699 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
NKX2-1P43699 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC12.25□□□□□ -0.45
NKX2-1P43699 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
NKX2-1P43699 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
NKX2-1P43699 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC12.24□□□□□ -0.45
NKX2-1P43699 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 FAM122B-202ENST00000343004 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 CACNA1G-233ENST00000515765 6981 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
NKX2-1P43699 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
NKX2-1P43699 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
NKX2-1P43699 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC12.24□□□□□ -0.45
NKX2-1P43699 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC12.24□□□□□ -0.45
NKX2-1P43699 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC12.24□□□□□ -0.45
NKX2-1P43699 API5-203ENST00000455725 2257 ntTSL 2 BASIC12.24□□□□□ -0.45
NKX2-1P43699 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC12.24□□□□□ -0.45
NKX2-1P43699 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC12.24□□□□□ -0.45
NKX2-1P43699 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
NKX2-1P43699 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC12.24□□□□□ -0.45
NKX2-1P43699 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC12.24□□□□□ -0.45
NKX2-1P43699 PRR29-209ENST00000582540 967 ntTSL 2 BASIC12.24□□□□□ -0.45
NKX2-1P43699 RN7SL828P-201ENST00000607615 303 ntBASIC12.24□□□□□ -0.45
NKX2-1P43699 AC003101.2-201ENST00000612557 442 ntBASIC12.24□□□□□ -0.45
NKX2-1P43699 AC073548.1-201ENST00000624088 1882 ntBASIC12.24□□□□□ -0.45
NKX2-1P43699 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC12.24□□□□□ -0.45
NKX2-1P43699 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC12.24□□□□□ -0.45
NKX2-1P43699 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC12.24□□□□□ -0.45
NKX2-1P43699 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 PKP1-203ENST00000367324 5384 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 ABCB8-202ENST00000358849 4683 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 EPHB1-201ENST00000398015 4672 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC12.24□□□□□ -0.45
NKX2-1P43699 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
NKX2-1P43699 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC12.24□□□□□ -0.45
NKX2-1P43699 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
NKX2-1P43699 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC12.24□□□□□ -0.45
NKX2-1P43699 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
NKX2-1P43699 C9orf47-203ENST00000375851 4837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
NKX2-1P43699 AL356585.2-201ENST00000625078 2396 ntBASIC12.23□□□□□ -0.45
NKX2-1P43699 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC12.23□□□□□ -0.45
NKX2-1P43699 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC12.23□□□□□ -0.45
NKX2-1P43699 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
NKX2-1P43699 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
NKX2-1P43699 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
NKX2-1P43699 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC12.23□□□□□ -0.45
NKX2-1P43699 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
NKX2-1P43699 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
NKX2-1P43699 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
NKX2-1P43699 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
NKX2-1P43699 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC12.23□□□□□ -0.45
NKX2-1P43699 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC12.23□□□□□ -0.45
NKX2-1P43699 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
NKX2-1P43699 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
NKX2-1P43699 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
NKX2-1P43699 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC12.23□□□□□ -0.45
NKX2-1P43699 AL035456.1-201ENST00000456064 1369 ntBASIC12.23□□□□□ -0.45
NKX2-1P43699 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
NKX2-1P43699 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
NKX2-1P43699 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
NKX2-1P43699 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
NKX2-1P43699 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC12.23□□□□□ -0.45
NKX2-1P43699 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC12.23□□□□□ -0.45
NKX2-1P43699 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC12.23□□□□□ -0.45
NKX2-1P43699 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC12.23□□□□□ -0.45
NKX2-1P43699 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC12.23□□□□□ -0.45
NKX2-1P43699 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC12.23□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms