Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC9P31274 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
HOXC9P31274 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC9P31274 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC9P31274 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
HOXC9P31274 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC9P31274 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC9P31274 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC19.37■□□□□ 0.69
HOXC9P31274 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC9P31274 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HOXC9P31274 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXC9P31274 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXC9P31274 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
HOXC9P31274 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC19.36■□□□□ 0.69
HOXC9P31274 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXC9P31274 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC19.36■□□□□ 0.69
HOXC9P31274 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC19.36■□□□□ 0.69
HOXC9P31274 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC19.36■□□□□ 0.69
HOXC9P31274 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC19.36■□□□□ 0.69
HOXC9P31274 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
HOXC9P31274 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC19.36■□□□□ 0.69
HOXC9P31274 AC114501.1-201ENST00000445949 172 ntBASIC19.36■□□□□ 0.69
HOXC9P31274 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC19.36■□□□□ 0.69
HOXC9P31274 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC19.36■□□□□ 0.69
HOXC9P31274 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC19.36■□□□□ 0.69
HOXC9P31274 MT3-203ENST00000565838 421 ntTSL 3 BASIC19.36■□□□□ 0.69
HOXC9P31274 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC19.36■□□□□ 0.69
HOXC9P31274 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC19.36■□□□□ 0.69
HOXC9P31274 AL161773.1-201ENST00000624845 863 ntBASIC19.36■□□□□ 0.69
HOXC9P31274 HLA-C-210ENST00000640219 976 ntBASIC19.36■□□□□ 0.69
HOXC9P31274 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
HOXC9P31274 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXC9P31274 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
HOXC9P31274 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
HOXC9P31274 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
HOXC9P31274 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC19.36■□□□□ 0.69
HOXC9P31274 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
HOXC9P31274 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXC9P31274 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC9P31274 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC9P31274 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
HOXC9P31274 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC9P31274 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
HOXC9P31274 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC9P31274 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC9P31274 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
HOXC9P31274 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC9P31274 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC9P31274 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
HOXC9P31274 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC9P31274 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC9P31274 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC9P31274 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC9P31274 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC19.35■□□□□ 0.69
HOXC9P31274 HIST2H2BA-201ENST00000412169 381 ntBASIC19.35■□□□□ 0.69
HOXC9P31274 OR8T1P-201ENST00000421347 918 ntBASIC19.35■□□□□ 0.69
HOXC9P31274 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC19.35■□□□□ 0.69
HOXC9P31274 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC19.35■□□□□ 0.69
HOXC9P31274 AC005041.3-201ENST00000606287 649 ntBASIC19.35■□□□□ 0.69
HOXC9P31274 AC107464.3-201ENST00000609172 737 ntBASIC19.35■□□□□ 0.69
HOXC9P31274 AC090386.2-201ENST00000623010 1039 ntBASIC19.35■□□□□ 0.69
HOXC9P31274 AC073911.3-201ENST00000624401 631 ntBASIC19.35■□□□□ 0.69
HOXC9P31274 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC9P31274 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC9P31274 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
HOXC9P31274 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC9P31274 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC9P31274 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC9P31274 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC9P31274 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC9P31274 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
HOXC9P31274 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
HOXC9P31274 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC9P31274 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC19.35■□□□□ 0.69
HOXC9P31274 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC9P31274 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
HOXC9P31274 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
HOXC9P31274 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
HOXC9P31274 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC9P31274 AJ011931.1-201ENST00000618749 2492 ntBASIC19.34■□□□□ 0.69
HOXC9P31274 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC9P31274 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC9P31274 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC19.34■□□□□ 0.69
HOXC9P31274 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC9P31274 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC9P31274 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC9P31274 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
HOXC9P31274 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC9P31274 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC9P31274 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC9P31274 Z69890.1-201ENST00000382990 339 ntBASIC19.34■□□□□ 0.69
HOXC9P31274 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC9P31274 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC19.34■□□□□ 0.69
HOXC9P31274 NEU3-207ENST00000534628 746 ntTSL 2 BASIC19.34■□□□□ 0.69
HOXC9P31274 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
HOXC9P31274 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
HOXC9P31274 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC19.34■□□□□ 0.69
HOXC9P31274 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC9P31274 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC19.34■□□□□ 0.69
HOXC9P31274 AL591471.1-201ENST00000621855 229 ntBASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms