Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.48□□□□□ -0.09
LDLRP01130 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
LDLRP01130 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LDLRP01130 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LDLRP01130 AC136604.1-201ENST00000418535 575 ntBASIC14.48□□□□□ -0.09
LDLRP01130 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC14.48□□□□□ -0.09
LDLRP01130 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC14.48□□□□□ -0.09
LDLRP01130 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC14.48□□□□□ -0.09
LDLRP01130 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC14.48□□□□□ -0.09
LDLRP01130 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC14.48□□□□□ -0.09
LDLRP01130 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LDLRP01130 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC14.48□□□□□ -0.09
LDLRP01130 AL033527.5-202ENST00000641632 1098 ntBASIC14.48□□□□□ -0.09
LDLRP01130 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
LDLRP01130 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LDLRP01130 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LDLRP01130 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC14.48□□□□□ -0.09
LDLRP01130 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC14.48□□□□□ -0.09
LDLRP01130 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LDLRP01130 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LDLRP01130 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LDLRP01130 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC14.48□□□□□ -0.09
LDLRP01130 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LDLRP01130 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LDLRP01130 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC14.48□□□□□ -0.09
LDLRP01130 FES-203ENST00000394302 2133 ntTSL 5 BASIC14.48□□□□□ -0.09
LDLRP01130 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LDLRP01130 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
LDLRP01130 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC14.48□□□□□ -0.09
LDLRP01130 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC14.48□□□□□ -0.09
LDLRP01130 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LDLRP01130 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC14.48□□□□□ -0.09
LDLRP01130 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
LDLRP01130 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LDLRP01130 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
LDLRP01130 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LDLRP01130 AC020907.1-201ENST00000616460 1350 ntBASIC14.47□□□□□ -0.09
LDLRP01130 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
LDLRP01130 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LDLRP01130 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LDLRP01130 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LDLRP01130 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
LDLRP01130 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LDLRP01130 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LDLRP01130 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14.47□□□□□ -0.09
LDLRP01130 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC14.47□□□□□ -0.09
LDLRP01130 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LDLRP01130 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LDLRP01130 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC14.47□□□□□ -0.09
LDLRP01130 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC14.47□□□□□ -0.09
LDLRP01130 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LDLRP01130 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
LDLRP01130 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LDLRP01130 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LDLRP01130 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
LDLRP01130 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LDLRP01130 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
LDLRP01130 KRT43P-201ENST00000434019 910 ntBASIC14.47□□□□□ -0.09
LDLRP01130 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC14.47□□□□□ -0.09
LDLRP01130 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC14.47□□□□□ -0.09
LDLRP01130 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
LDLRP01130 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC14.47□□□□□ -0.09
LDLRP01130 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC14.47□□□□□ -0.09
LDLRP01130 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC14.47□□□□□ -0.09
LDLRP01130 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.47□□□□□ -0.09
LDLRP01130 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC14.47□□□□□ -0.09
LDLRP01130 AL583810.1-201ENST00000553344 1045 ntBASIC14.47□□□□□ -0.09
LDLRP01130 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC14.47□□□□□ -0.09
LDLRP01130 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC14.47□□□□□ -0.09
LDLRP01130 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC14.47□□□□□ -0.09
LDLRP01130 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC14.47□□□□□ -0.09
LDLRP01130 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LDLRP01130 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC14.47□□□□□ -0.09
LDLRP01130 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
LDLRP01130 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LDLRP01130 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
LDLRP01130 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.47□□□□□ -0.09
LDLRP01130 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
LDLRP01130 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
LDLRP01130 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LDLRP01130 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC14.47□□□□□ -0.09
LDLRP01130 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.47□□□□□ -0.09
LDLRP01130 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LDLRP01130 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LDLRP01130 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
LDLRP01130 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC14.46□□□□□ -0.09
LDLRP01130 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
LDLRP01130 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
LDLRP01130 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LDLRP01130 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
LDLRP01130 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
LDLRP01130 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LDLRP01130 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
LDLRP01130 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
LDLRP01130 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.09
LDLRP01130 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LDLRP01130 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
LDLRP01130 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC14.46□□□□□ -0.09
LDLRP01130 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
LDLRP01130 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms