Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
SLC28A1O00337 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SLC28A1O00337 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC14.36□□□□□ -0.11
SLC28A1O00337 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SLC28A1O00337 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SLC28A1O00337 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SLC28A1O00337 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SLC28A1O00337 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC14.35□□□□□ -0.11
SLC28A1O00337 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
SLC28A1O00337 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SLC28A1O00337 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
SLC28A1O00337 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC14.35□□□□□ -0.11
SLC28A1O00337 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC14.35□□□□□ -0.11
SLC28A1O00337 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SLC28A1O00337 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SLC28A1O00337 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SLC28A1O00337 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SLC28A1O00337 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
SLC28A1O00337 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
SLC28A1O00337 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SLC28A1O00337 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
SLC28A1O00337 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
SLC28A1O00337 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
SLC28A1O00337 RFPL4AP1-201ENST00000530883 850 ntBASIC14.35□□□□□ -0.11
SLC28A1O00337 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC14.35□□□□□ -0.11
SLC28A1O00337 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC14.35□□□□□ -0.11
SLC28A1O00337 MIR6074-201ENST00000612054 107 ntBASIC14.35□□□□□ -0.11
SLC28A1O00337 METTL26-214ENST00000614890 801 ntTSL 3 BASIC14.35□□□□□ -0.11
SLC28A1O00337 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC14.35□□□□□ -0.11
SLC28A1O00337 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SLC28A1O00337 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC14.35□□□□□ -0.11
SLC28A1O00337 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.35□□□□□ -0.11
SLC28A1O00337 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC14.35□□□□□ -0.11
SLC28A1O00337 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
SLC28A1O00337 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SLC28A1O00337 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SLC28A1O00337 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SLC28A1O00337 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SLC28A1O00337 OS9-207ENST00000439210 1946 ntTSL 2 BASIC14.35□□□□□ -0.11
SLC28A1O00337 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SLC28A1O00337 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SLC28A1O00337 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC14.35□□□□□ -0.11
SLC28A1O00337 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC14.35□□□□□ -0.11
SLC28A1O00337 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SLC28A1O00337 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SLC28A1O00337 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SLC28A1O00337 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SLC28A1O00337 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SLC28A1O00337 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
SLC28A1O00337 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SLC28A1O00337 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SLC28A1O00337 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SLC28A1O00337 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SLC28A1O00337 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SLC28A1O00337 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
SLC28A1O00337 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SLC28A1O00337 INE2-201ENST00000630399 1874 ntBASIC14.34□□□□□ -0.11
SLC28A1O00337 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SLC28A1O00337 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
SLC28A1O00337 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SLC28A1O00337 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SLC28A1O00337 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SLC28A1O00337 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
SLC28A1O00337 NSL1-201ENST00000366976 722 ntTSL 2 BASIC14.34□□□□□ -0.11
SLC28A1O00337 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SLC28A1O00337 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SLC28A1O00337 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SLC28A1O00337 GALT-202ENST00000450095 1280 ntTSL 2 BASIC14.34□□□□□ -0.11
SLC28A1O00337 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC14.34□□□□□ -0.11
SLC28A1O00337 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC14.34□□□□□ -0.11
SLC28A1O00337 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC14.34□□□□□ -0.11
SLC28A1O00337 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC14.34□□□□□ -0.11
SLC28A1O00337 AC131206.1-201ENST00000538078 1211 ntBASIC14.34□□□□□ -0.11
SLC28A1O00337 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC14.34□□□□□ -0.11
SLC28A1O00337 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC14.34□□□□□ -0.11
SLC28A1O00337 AP001063.1-201ENST00000568332 529 ntBASIC14.34□□□□□ -0.11
SLC28A1O00337 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SLC28A1O00337 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.34□□□□□ -0.11
SLC28A1O00337 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC14.34□□□□□ -0.11
SLC28A1O00337 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC14.34□□□□□ -0.11
SLC28A1O00337 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC14.34□□□□□ -0.11
SLC28A1O00337 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC14.34□□□□□ -0.11
SLC28A1O00337 AC005252.2-201ENST00000624630 1141 ntBASIC14.34□□□□□ -0.11
SLC28A1O00337 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SLC28A1O00337 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SLC28A1O00337 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
SLC28A1O00337 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SLC28A1O00337 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SLC28A1O00337 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SLC28A1O00337 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC14.34□□□□□ -0.11
SLC28A1O00337 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SLC28A1O00337 AC011840.2-201ENST00000563063 1520 ntBASIC14.34□□□□□ -0.11
SLC28A1O00337 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SLC28A1O00337 AL138725.1-201ENST00000407347 1314 ntBASIC14.34□□□□□ -0.11
SLC28A1O00337 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC14.34□□□□□ -0.11
SLC28A1O00337 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
SLC28A1O00337 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SLC28A1O00337 RN7SL832P-201ENST00000607781 1756 ntBASIC14.34□□□□□ -0.11
SLC28A1O00337 C1R-201ENST00000535233 2211 ntTSL 2 BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms