Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CLRN1P58418 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC13.35□□□□□ -0.27
CLRN1P58418 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC13.35□□□□□ -0.27
CLRN1P58418 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC13.35□□□□□ -0.27
CLRN1P58418 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
CLRN1P58418 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC13.35□□□□□ -0.27
CLRN1P58418 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CLRN1P58418 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
CLRN1P58418 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLRN1P58418 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLRN1P58418 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLRN1P58418 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC13.35□□□□□ -0.27
CLRN1P58418 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC13.35□□□□□ -0.27
CLRN1P58418 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLRN1P58418 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
CLRN1P58418 DMBT1P1-203ENST00000636837 4628 ntBASIC13.35□□□□□ -0.27
CLRN1P58418 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLRN1P58418 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLRN1P58418 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC13.35□□□□□ -0.27
CLRN1P58418 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLRN1P58418 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLRN1P58418 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC13.35□□□□□ -0.27
CLRN1P58418 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC13.35□□□□□ -0.27
CLRN1P58418 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLRN1P58418 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CLRN1P58418 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC13.35□□□□□ -0.27
CLRN1P58418 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
CLRN1P58418 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CLRN1P58418 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CLRN1P58418 AC131212.3-201ENST00000624087 4219 ntBASIC13.34□□□□□ -0.27
CLRN1P58418 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CLRN1P58418 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC13.34□□□□□ -0.27
CLRN1P58418 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CLRN1P58418 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CLRN1P58418 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
CLRN1P58418 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC13.34□□□□□ -0.27
CLRN1P58418 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CLRN1P58418 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
CLRN1P58418 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
CLRN1P58418 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC13.34□□□□□ -0.27
CLRN1P58418 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CLRN1P58418 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CLRN1P58418 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CLRN1P58418 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
CLRN1P58418 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CLRN1P58418 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CLRN1P58418 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CLRN1P58418 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CLRN1P58418 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC13.34□□□□□ -0.27
CLRN1P58418 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC13.34□□□□□ -0.27
CLRN1P58418 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CLRN1P58418 AL355864.2-201ENST00000447420 863 ntBASIC13.34□□□□□ -0.27
CLRN1P58418 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC13.34□□□□□ -0.27
CLRN1P58418 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC13.34□□□□□ -0.27
CLRN1P58418 FO681548.1-201ENST00000455617 1132 ntBASIC13.34□□□□□ -0.27
CLRN1P58418 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC13.34□□□□□ -0.27
CLRN1P58418 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC13.34□□□□□ -0.27
CLRN1P58418 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC13.34□□□□□ -0.27
CLRN1P58418 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CLRN1P58418 MIR5189-201ENST00000577370 114 ntBASIC13.34□□□□□ -0.27
CLRN1P58418 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC13.34□□□□□ -0.27
CLRN1P58418 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC13.34□□□□□ -0.27
CLRN1P58418 AC025048.6-201ENST00000634326 1161 ntBASIC13.34□□□□□ -0.27
CLRN1P58418 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
CLRN1P58418 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CLRN1P58418 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CLRN1P58418 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC13.34□□□□□ -0.27
CLRN1P58418 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC13.34□□□□□ -0.27
CLRN1P58418 AC005912.2-201ENST00000619492 2400 ntBASIC13.34□□□□□ -0.27
CLRN1P58418 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CLRN1P58418 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
CLRN1P58418 USP28-214ENST00000545540 3431 ntTSL 2 BASIC13.34□□□□□ -0.27
CLRN1P58418 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
CLRN1P58418 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
CLRN1P58418 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CLRN1P58418 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
CLRN1P58418 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC13.34□□□□□ -0.27
CLRN1P58418 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC13.34□□□□□ -0.27
CLRN1P58418 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
CLRN1P58418 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC13.34□□□□□ -0.27
CLRN1P58418 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
CLRN1P58418 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CLRN1P58418 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CLRN1P58418 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CLRN1P58418 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CLRN1P58418 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC13.34□□□□□ -0.27
CLRN1P58418 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CLRN1P58418 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
CLRN1P58418 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
CLRN1P58418 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
CLRN1P58418 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CLRN1P58418 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
CLRN1P58418 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
CLRN1P58418 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC13.33□□□□□ -0.28
CLRN1P58418 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CLRN1P58418 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CLRN1P58418 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC13.33□□□□□ -0.28
CLRN1P58418 AC023908.3-201ENST00000564211 3047 ntBASIC13.33□□□□□ -0.28
CLRN1P58418 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CLRN1P58418 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC13.33□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms