Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.42□□□□□ -0.1
FOXA1P55317 AL132655.2-201ENST00000596276 594 ntBASIC14.42□□□□□ -0.1
FOXA1P55317 AC006538.3-201ENST00000612495 578 ntBASIC14.42□□□□□ -0.1
FOXA1P55317 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC14.42□□□□□ -0.1
FOXA1P55317 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA1P55317 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC14.42□□□□□ -0.1
FOXA1P55317 AC215219.1-201ENST00000400706 1817 ntBASIC14.42□□□□□ -0.1
FOXA1P55317 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA1P55317 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA1P55317 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA1P55317 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA1P55317 AC020910.6-201ENST00000623084 1459 ntBASIC14.42□□□□□ -0.1
FOXA1P55317 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
FOXA1P55317 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC14.42□□□□□ -0.1
FOXA1P55317 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
FOXA1P55317 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA1P55317 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA1P55317 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA1P55317 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA1P55317 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC14.42□□□□□ -0.1
FOXA1P55317 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA1P55317 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC14.42□□□□□ -0.1
FOXA1P55317 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC14.42□□□□□ -0.1
FOXA1P55317 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA1P55317 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC14.41□□□□□ -0.1
FOXA1P55317 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA1P55317 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
FOXA1P55317 WARS-203ENST00000358655 2466 ntTSL 2 BASIC14.41□□□□□ -0.1
FOXA1P55317 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA1P55317 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
FOXA1P55317 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC14.41□□□□□ -0.1
FOXA1P55317 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA1P55317 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA1P55317 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA1P55317 ARHGAP23P1-201ENST00000562773 1937 ntBASIC14.41□□□□□ -0.1
FOXA1P55317 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
FOXA1P55317 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA1P55317 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA1P55317 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA1P55317 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA1P55317 RN7SKP230-201ENST00000365642 335 ntBASIC14.41□□□□□ -0.1
FOXA1P55317 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA1P55317 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA1P55317 TLE1P1-201ENST00000422965 589 ntBASIC14.41□□□□□ -0.1
FOXA1P55317 ELK1P1-201ENST00000485699 580 ntBASIC14.41□□□□□ -0.1
FOXA1P55317 INGX-202ENST00000489074 768 ntBASIC14.41□□□□□ -0.1
FOXA1P55317 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA1P55317 AC131206.1-201ENST00000538078 1211 ntBASIC14.41□□□□□ -0.1
FOXA1P55317 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC14.41□□□□□ -0.1
FOXA1P55317 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC14.41□□□□□ -0.1
FOXA1P55317 AC133539.2-201ENST00000604757 467 ntBASIC14.41□□□□□ -0.1
FOXA1P55317 TMEM261P1-201ENST00000604899 340 ntBASIC14.41□□□□□ -0.1
FOXA1P55317 AC009118.2-201ENST00000613275 655 ntBASIC14.41□□□□□ -0.1
FOXA1P55317 AL603764.1-201ENST00000636452 321 ntBASIC14.41□□□□□ -0.1
FOXA1P55317 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC14.41□□□□□ -0.1
FOXA1P55317 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA1P55317 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
FOXA1P55317 AC007541.1-201ENST00000570282 1469 ntBASIC14.41□□□□□ -0.1
FOXA1P55317 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA1P55317 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
FOXA1P55317 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
FOXA1P55317 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC14.41□□□□□ -0.1
FOXA1P55317 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA1P55317 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA1P55317 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA1P55317 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
FOXA1P55317 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC14.41□□□□□ -0.1
FOXA1P55317 AL359881.3-201ENST00000602640 1721 ntBASIC14.41□□□□□ -0.1
FOXA1P55317 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
FOXA1P55317 AC015688.4-201ENST00000580780 1647 ntBASIC14.41□□□□□ -0.1
FOXA1P55317 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA1P55317 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA1P55317 AL138725.1-201ENST00000407347 1314 ntBASIC14.41□□□□□ -0.1
FOXA1P55317 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA1P55317 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA1P55317 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA1P55317 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA1P55317 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA1P55317 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
FOXA1P55317 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA1P55317 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
FOXA1P55317 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC14.4□□□□□ -0.1
FOXA1P55317 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC14.4□□□□□ -0.1
FOXA1P55317 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC14.4□□□□□ -0.1
FOXA1P55317 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC14.4□□□□□ -0.1
FOXA1P55317 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA1P55317 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA1P55317 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA1P55317 CALY-202ENST00000368555 783 ntTSL 2 BASIC14.4□□□□□ -0.1
FOXA1P55317 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
FOXA1P55317 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
FOXA1P55317 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA1P55317 GGCT-205ENST00000409436 954 ntTSL 3 BASIC14.4□□□□□ -0.1
FOXA1P55317 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA1P55317 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC14.4□□□□□ -0.1
FOXA1P55317 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA1P55317 CYMP-203ENST00000474680 1263 ntBASIC14.4□□□□□ -0.1
FOXA1P55317 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC14.4□□□□□ -0.1
FOXA1P55317 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC14.4□□□□□ -0.1
FOXA1P55317 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms