Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIMK1P53667 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIMK1P53667 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC14.65□□□□□ -0.06
LIMK1P53667 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIMK1P53667 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIMK1P53667 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC14.65□□□□□ -0.06
LIMK1P53667 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LIMK1P53667 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIMK1P53667 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIMK1P53667 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LIMK1P53667 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIMK1P53667 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC14.65□□□□□ -0.06
LIMK1P53667 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LIMK1P53667 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIMK1P53667 RN7SKP175-201ENST00000408472 289 ntBASIC14.65□□□□□ -0.06
LIMK1P53667 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC14.65□□□□□ -0.06
LIMK1P53667 AC026320.2-201ENST00000434379 478 ntBASIC14.65□□□□□ -0.06
LIMK1P53667 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC14.65□□□□□ -0.06
LIMK1P53667 MDH2-205ENST00000461263 648 ntTSL 2 BASIC14.65□□□□□ -0.06
LIMK1P53667 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC14.65□□□□□ -0.06
LIMK1P53667 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC14.65□□□□□ -0.06
LIMK1P53667 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LIMK1P53667 C2orf69P1-201ENST00000563532 1093 ntBASIC14.65□□□□□ -0.06
LIMK1P53667 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC14.65□□□□□ -0.06
LIMK1P53667 MIR3677-201ENST00000578964 60 ntBASIC14.65□□□□□ -0.06
LIMK1P53667 MIR4683-201ENST00000579659 81 ntBASIC14.65□□□□□ -0.06
LIMK1P53667 NAT9-220ENST00000582870 896 ntTSL 5 BASIC14.65□□□□□ -0.06
LIMK1P53667 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC14.65□□□□□ -0.06
LIMK1P53667 RPL17P45-201ENST00000586289 509 ntBASIC14.65□□□□□ -0.06
LIMK1P53667 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
LIMK1P53667 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
LIMK1P53667 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC14.65□□□□□ -0.06
LIMK1P53667 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
LIMK1P53667 AC092299.1-201ENST00000632679 757 ntBASIC14.65□□□□□ -0.06
LIMK1P53667 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC14.65□□□□□ -0.06
LIMK1P53667 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC14.65□□□□□ -0.06
LIMK1P53667 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC14.65□□□□□ -0.06
LIMK1P53667 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
LIMK1P53667 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LIMK1P53667 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIMK1P53667 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
LIMK1P53667 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIMK1P53667 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIMK1P53667 LINC00528-201ENST00000600723 2160 ntBASIC14.65□□□□□ -0.06
LIMK1P53667 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC14.65□□□□□ -0.06
LIMK1P53667 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIMK1P53667 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC14.65□□□□□ -0.06
LIMK1P53667 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
LIMK1P53667 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIMK1P53667 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC14.65□□□□□ -0.06
LIMK1P53667 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIMK1P53667 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
LIMK1P53667 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIMK1P53667 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LIMK1P53667 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIMK1P53667 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
LIMK1P53667 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIMK1P53667 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIMK1P53667 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.06
LIMK1P53667 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
LIMK1P53667 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIMK1P53667 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIMK1P53667 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIMK1P53667 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
LIMK1P53667 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIMK1P53667 POR-201ENST00000394893 2532 ntTSL 5 BASIC14.64□□□□□ -0.07
LIMK1P53667 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LIMK1P53667 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIMK1P53667 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC14.64□□□□□ -0.07
LIMK1P53667 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIMK1P53667 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LIMK1P53667 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIMK1P53667 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LIMK1P53667 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
LIMK1P53667 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC14.64□□□□□ -0.07
LIMK1P53667 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LIMK1P53667 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LIMK1P53667 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LIMK1P53667 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LIMK1P53667 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.64□□□□□ -0.07
LIMK1P53667 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.64□□□□□ -0.07
LIMK1P53667 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIMK1P53667 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
LIMK1P53667 AL512430.1-201ENST00000392575 860 ntBASIC14.64□□□□□ -0.07
LIMK1P53667 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LIMK1P53667 BCAS2P2-201ENST00000425064 674 ntBASIC14.64□□□□□ -0.07
LIMK1P53667 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LIMK1P53667 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LIMK1P53667 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC14.64□□□□□ -0.07
LIMK1P53667 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC14.64□□□□□ -0.07
LIMK1P53667 CHCHD2P9-201ENST00000461726 456 ntBASIC14.64□□□□□ -0.07
LIMK1P53667 ALG1L6P-201ENST00000515248 758 ntBASIC14.64□□□□□ -0.07
LIMK1P53667 ALG1L13P-202ENST00000519320 584 ntBASIC14.64□□□□□ -0.07
LIMK1P53667 AC008805.1-201ENST00000590892 364 ntBASIC14.64□□□□□ -0.07
LIMK1P53667 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC14.64□□□□□ -0.07
LIMK1P53667 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.64□□□□□ -0.07
LIMK1P53667 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
LIMK1P53667 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIMK1P53667 AC055811.4-201ENST00000624039 1754 ntBASIC14.64□□□□□ -0.07
LIMK1P53667 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms