Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC14.9□□□□□ -0.02
SHOX2O60902 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC14.9□□□□□ -0.02
SHOX2O60902 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHOX2O60902 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHOX2O60902 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHOX2O60902 PCDHA11-202ENST00000616325 3418 ntAPPRIS ALT2 BASIC14.9□□□□□ -0.02
SHOX2O60902 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC14.9□□□□□ -0.02
SHOX2O60902 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHOX2O60902 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
SHOX2O60902 AL445209.1-201ENST00000607269 3491 ntBASIC14.9□□□□□ -0.02
SHOX2O60902 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHOX2O60902 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHOX2O60902 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SHOX2O60902 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC14.9□□□□□ -0.02
SHOX2O60902 RNA5SP419-201ENST00000515908 135 ntBASIC14.9□□□□□ -0.02
SHOX2O60902 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SHOX2O60902 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
SHOX2O60902 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.9□□□□□ -0.02
SHOX2O60902 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC14.9□□□□□ -0.02
SHOX2O60902 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
SHOX2O60902 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC14.9□□□□□ -0.02
SHOX2O60902 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHOX2O60902 AC023141.13-201ENST00000604991 943 ntBASIC14.9□□□□□ -0.02
SHOX2O60902 AQP6-205ENST00000618286 829 ntTSL 5 BASIC14.9□□□□□ -0.02
SHOX2O60902 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHOX2O60902 PPP1R8-202ENST00000311772 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHOX2O60902 PRAM1-201ENST00000423345 2667 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHOX2O60902 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SHOX2O60902 PDE4A-204ENST00000440014 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHOX2O60902 NEK4-207ENST00000535191 2452 ntTSL 2 BASIC14.9□□□□□ -0.02
SHOX2O60902 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHOX2O60902 GLB1L-201ENST00000295759 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHOX2O60902 CELF2-216ENST00000637215 2724 ntTSL 5 BASIC14.9□□□□□ -0.02
SHOX2O60902 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHOX2O60902 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHOX2O60902 ZNF341-202ENST00000375200 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHOX2O60902 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC14.9□□□□□ -0.02
SHOX2O60902 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
SHOX2O60902 BCAR1-209ENST00000546196 1340 ntBASIC14.9□□□□□ -0.02
SHOX2O60902 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
SHOX2O60902 AGGF1P10-201ENST00000635005 2191 ntBASIC14.9□□□□□ -0.02
SHOX2O60902 HTR5A-201ENST00000287907 2912 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHOX2O60902 MIR600HG-201ENST00000449175 5984 ntBASIC14.89□□□□□ -0.03
SHOX2O60902 FBRSL1-205ENST00000542061 3175 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
SHOX2O60902 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.89□□□□□ -0.03
SHOX2O60902 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SHOX2O60902 IKBKE-201ENST00000578328 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHOX2O60902 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SHOX2O60902 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHOX2O60902 NUP54-201ENST00000264883 2367 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHOX2O60902 FGF10-AS1-201ENST00000502457 1894 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SHOX2O60902 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC14.89□□□□□ -0.03
SHOX2O60902 PCDHB10-201ENST00000239446 3290 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
SHOX2O60902 ELOVL4-201ENST00000369816 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHOX2O60902 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC14.89□□□□□ -0.03
SHOX2O60902 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
SHOX2O60902 SPATS2-201ENST00000321898 3158 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHOX2O60902 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHOX2O60902 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHOX2O60902 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SHOX2O60902 HLA-H-201ENST00000383620 1096 ntBASIC14.89□□□□□ -0.03
SHOX2O60902 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SHOX2O60902 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
SHOX2O60902 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC14.89□□□□□ -0.03
SHOX2O60902 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC14.89□□□□□ -0.03
SHOX2O60902 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC14.89□□□□□ -0.03
SHOX2O60902 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC14.89□□□□□ -0.03
SHOX2O60902 IGHV3-22-201ENST00000520721 359 ntBASIC14.89□□□□□ -0.03
SHOX2O60902 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC14.89□□□□□ -0.03
SHOX2O60902 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
SHOX2O60902 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.89□□□□□ -0.03
SHOX2O60902 MED16-214ENST00000617672 554 ntTSL 5 BASIC14.89□□□□□ -0.03
SHOX2O60902 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC14.89□□□□□ -0.03
SHOX2O60902 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.89□□□□□ -0.03
SHOX2O60902 AC004877.2-201ENST00000623941 599 ntBASIC14.89□□□□□ -0.03
SHOX2O60902 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHOX2O60902 NOX5-202ENST00000388866 2804 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SHOX2O60902 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHOX2O60902 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
SHOX2O60902 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHOX2O60902 ADCY4-202ENST00000418030 3353 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHOX2O60902 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SHOX2O60902 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
SHOX2O60902 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
SHOX2O60902 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
SHOX2O60902 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
SHOX2O60902 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SHOX2O60902 CDK5RAP1-203ENST00000357886 2164 ntTSL 5 BASIC14.88□□□□□ -0.03
SHOX2O60902 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
SHOX2O60902 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHOX2O60902 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
SHOX2O60902 NAGK-202ENST00000418807 2343 ntTSL 5 BASIC14.88□□□□□ -0.03
SHOX2O60902 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
SHOX2O60902 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
SHOX2O60902 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
SHOX2O60902 PI4KAP2-201ENST00000360806 2080 ntBASIC14.88□□□□□ -0.03
SHOX2O60902 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC14.88□□□□□ -0.03
SHOX2O60902 ADAM19-203ENST00000517905 3312 ntTSL 5 BASIC14.88□□□□□ -0.03
SHOX2O60902 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SHOX2O60902 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms