Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC18.31■□□□□ 0.52
CACNA1FO60840 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC18.31■□□□□ 0.52
CACNA1FO60840 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CACNA1FO60840 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CACNA1FO60840 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CACNA1FO60840 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC18.31■□□□□ 0.52
CACNA1FO60840 AL662890.1-201ENST00000396818 632 ntBASIC18.31■□□□□ 0.52
CACNA1FO60840 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CACNA1FO60840 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC18.31■□□□□ 0.52
CACNA1FO60840 OR8T1P-201ENST00000421347 918 ntBASIC18.31■□□□□ 0.52
CACNA1FO60840 NAGK-204ENST00000443872 878 ntTSL 3 BASIC18.31■□□□□ 0.52
CACNA1FO60840 AC006335.1-201ENST00000445200 547 ntBASIC18.31■□□□□ 0.52
CACNA1FO60840 CEP164P1-201ENST00000455142 418 ntBASIC18.31■□□□□ 0.52
CACNA1FO60840 TPI1-206ENST00000488464 791 ntTSL 5 BASIC18.31■□□□□ 0.52
CACNA1FO60840 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
CACNA1FO60840 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC18.31■□□□□ 0.52
CACNA1FO60840 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC18.31■□□□□ 0.52
CACNA1FO60840 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC18.31■□□□□ 0.52
CACNA1FO60840 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CACNA1FO60840 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CACNA1FO60840 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CACNA1FO60840 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
CACNA1FO60840 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CACNA1FO60840 GSN-203ENST00000373808 2664 ntTSL 2 BASIC18.31■□□□□ 0.52
CACNA1FO60840 AC005912.2-201ENST00000619492 2400 ntBASIC18.31■□□□□ 0.52
CACNA1FO60840 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC18.3■□□□□ 0.52
CACNA1FO60840 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC18.3■□□□□ 0.52
CACNA1FO60840 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CACNA1FO60840 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CACNA1FO60840 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CACNA1FO60840 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CACNA1FO60840 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CACNA1FO60840 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CACNA1FO60840 AC234782.1-201ENST00000451950 919 ntBASIC18.3■□□□□ 0.52
CACNA1FO60840 FTH1P22-201ENST00000456305 520 ntBASIC18.3■□□□□ 0.52
CACNA1FO60840 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CACNA1FO60840 FGFR3P5-201ENST00000564496 886 ntBASIC18.3■□□□□ 0.52
CACNA1FO60840 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC18.3■□□□□ 0.52
CACNA1FO60840 AC009145.4-201ENST00000625119 1294 ntBASIC18.3■□□□□ 0.52
CACNA1FO60840 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CACNA1FO60840 TKT-201ENST00000296289 1931 ntTSL 5 BASIC18.3■□□□□ 0.52
CACNA1FO60840 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CACNA1FO60840 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CACNA1FO60840 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
CACNA1FO60840 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CACNA1FO60840 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC18.3■□□□□ 0.52
CACNA1FO60840 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CACNA1FO60840 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CACNA1FO60840 AC073869.2-201ENST00000417338 1026 ntBASIC18.3■□□□□ 0.52
CACNA1FO60840 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CACNA1FO60840 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC18.3■□□□□ 0.52
CACNA1FO60840 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
CACNA1FO60840 MAX-218ENST00000557746 571 ntTSL 4 BASIC18.3■□□□□ 0.52
CACNA1FO60840 SKA2-205ENST00000580541 689 ntTSL 3 BASIC18.3■□□□□ 0.52
CACNA1FO60840 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC18.3■□□□□ 0.52
CACNA1FO60840 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC18.29■□□□□ 0.52
CACNA1FO60840 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CACNA1FO60840 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CACNA1FO60840 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CACNA1FO60840 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CACNA1FO60840 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC18.29■□□□□ 0.52
CACNA1FO60840 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CACNA1FO60840 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CACNA1FO60840 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
CACNA1FO60840 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC18.29■□□□□ 0.52
CACNA1FO60840 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CACNA1FO60840 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC18.29■□□□□ 0.52
CACNA1FO60840 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC18.29■□□□□ 0.52
CACNA1FO60840 AMT-256ENST00000638063 1783 ntTSL 5 BASIC18.29■□□□□ 0.52
CACNA1FO60840 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC18.29■□□□□ 0.52
CACNA1FO60840 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC18.29■□□□□ 0.52
CACNA1FO60840 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
CACNA1FO60840 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CACNA1FO60840 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC18.29■□□□□ 0.52
CACNA1FO60840 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC18.29■□□□□ 0.52
CACNA1FO60840 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC18.29■□□□□ 0.52
CACNA1FO60840 BAP1-211ENST00000615113 489 ntBASIC18.29■□□□□ 0.52
CACNA1FO60840 SNX12-206ENST00000622259 661 ntTSL 5 BASIC18.29■□□□□ 0.52
CACNA1FO60840 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC18.29■□□□□ 0.52
CACNA1FO60840 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC18.29■□□□□ 0.52
CACNA1FO60840 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CACNA1FO60840 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CACNA1FO60840 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC18.29■□□□□ 0.52
CACNA1FO60840 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CACNA1FO60840 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC18.29■□□□□ 0.52
CACNA1FO60840 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CACNA1FO60840 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CACNA1FO60840 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CACNA1FO60840 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CACNA1FO60840 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CACNA1FO60840 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CACNA1FO60840 BRD7P5-201ENST00000299197 1822 ntBASIC18.28■□□□□ 0.52
CACNA1FO60840 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC18.28■□□□□ 0.52
CACNA1FO60840 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
CACNA1FO60840 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CACNA1FO60840 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CACNA1FO60840 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CACNA1FO60840 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CACNA1FO60840 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
CACNA1FO60840 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms