Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 FAM58BP-201ENST00000439056 645 ntBASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 BNIP3P13-201ENST00000599968 566 ntBASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 ZEB1-AS1-208ENST00000607166 2503 ntBASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 AC091951.1-201ENST00000512854 2465 ntBASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 OR2I1P-209ENST00000641730 5365 ntBASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 AL136379.1-201ENST00000623471 2642 ntBASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 RNMTL1P1-201ENST00000454103 560 ntBASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 IGHV3OR16-16-201ENST00000563644 343 ntBASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 AC005324.6-201ENST00000587972 613 ntBASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 AC138649.2-201ENST00000615886 705 ntBASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC13.22□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms