Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 CICP20-201ENST00000443330 2801 ntBASIC13.68□□□□□ -0.22
CLN6Q9NWW5 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 AC105206.1-202ENST00000314927 2368 ntBASIC13.67□□□□□ -0.22
CLN6Q9NWW5 PPT1-213ENST00000641319 2388 ntBASIC13.67□□□□□ -0.22
CLN6Q9NWW5 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 STOM-202ENST00000347359 870 ntTSL 2 BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 SERBP1P3-201ENST00000459980 809 ntBASIC13.67□□□□□ -0.22
CLN6Q9NWW5 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 AC093520.2-201ENST00000561830 333 ntBASIC13.67□□□□□ -0.22
CLN6Q9NWW5 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 AC026150.2-201ENST00000564693 1156 ntBASIC13.67□□□□□ -0.22
CLN6Q9NWW5 AC005829.1-201ENST00000570002 483 ntBASIC13.67□□□□□ -0.22
CLN6Q9NWW5 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 LINC00628-201ENST00000628516 1289 ntBASIC13.67□□□□□ -0.22
CLN6Q9NWW5 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 GALC-206ENST00000544807 2528 ntTSL 2 BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 POU2F2-202ENST00000389341 6901 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 ADK-205ENST00000539909 1866 ntTSL 2 BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 STRCP1-201ENST00000509801 5328 ntBASIC13.67□□□□□ -0.22
CLN6Q9NWW5 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLN6Q9NWW5 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 AC015818.8-201ENST00000587907 1519 ntBASIC13.66□□□□□ -0.22
CLN6Q9NWW5 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 AL157414.3-201ENST00000624276 1954 ntBASIC13.66□□□□□ -0.22
CLN6Q9NWW5 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 AC004461.1-201ENST00000412461 403 ntBASIC13.66□□□□□ -0.22
CLN6Q9NWW5 TOMM22P5-201ENST00000416399 439 ntBASIC13.66□□□□□ -0.22
CLN6Q9NWW5 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 CCND1-203ENST00000536559 553 ntTSL 3 BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLN6Q9NWW5 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 61.6 ms