Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USP47Q96K76 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC20.65■□□□□ 0.9
USP47Q96K76 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC20.65■□□□□ 0.9
USP47Q96K76 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP47Q96K76 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP47Q96K76 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC20.65■□□□□ 0.9
USP47Q96K76 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP47Q96K76 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC20.65■□□□□ 0.9
USP47Q96K76 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP47Q96K76 FAS-202ENST00000352159 1722 ntTSL 5 BASIC20.65■□□□□ 0.9
USP47Q96K76 HNRNPA1P32-201ENST00000396326 963 ntBASIC20.65■□□□□ 0.9
USP47Q96K76 PTPA-218ENST00000435132 618 ntTSL 2 BASIC20.65■□□□□ 0.9
USP47Q96K76 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC20.65■□□□□ 0.9
USP47Q96K76 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP47Q96K76 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC20.65■□□□□ 0.9
USP47Q96K76 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
USP47Q96K76 AL160314.3-201ENST00000556041 767 ntBASIC20.65■□□□□ 0.9
USP47Q96K76 CYP4F23P-201ENST00000593402 1579 ntBASIC20.65■□□□□ 0.9
USP47Q96K76 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC20.65■□□□□ 0.9
USP47Q96K76 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP47Q96K76 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP47Q96K76 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USP47Q96K76 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC20.65■□□□□ 0.9
USP47Q96K76 BX640514.1-201ENST00000583223 1918 ntBASIC20.65■□□□□ 0.9
USP47Q96K76 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC20.65■□□□□ 0.9
USP47Q96K76 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USP47Q96K76 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP47Q96K76 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC20.65■□□□□ 0.9
USP47Q96K76 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP47Q96K76 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP47Q96K76 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP47Q96K76 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
USP47Q96K76 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
USP47Q96K76 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
USP47Q96K76 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC20.64■□□□□ 0.9
USP47Q96K76 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
USP47Q96K76 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC20.64■□□□□ 0.9
USP47Q96K76 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
USP47Q96K76 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP47Q96K76 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC20.64■□□□□ 0.89
USP47Q96K76 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP47Q96K76 FAM58BP-201ENST00000439056 645 ntBASIC20.64■□□□□ 0.89
USP47Q96K76 AC004898.1-201ENST00000451057 766 ntBASIC20.64■□□□□ 0.89
USP47Q96K76 SERPINA13P-202ENST00000478994 924 ntBASIC20.64■□□□□ 0.89
USP47Q96K76 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USP47Q96K76 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
USP47Q96K76 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC20.64■□□□□ 0.89
USP47Q96K76 MIR3615-201ENST00000581999 87 ntBASIC20.64■□□□□ 0.89
USP47Q96K76 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC20.64■□□□□ 0.89
USP47Q96K76 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.89
USP47Q96K76 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC20.64■□□□□ 0.89
USP47Q96K76 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP47Q96K76 AMT-204ENST00000427987 1646 ntTSL 5 BASIC20.64■□□□□ 0.89
USP47Q96K76 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP47Q96K76 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP47Q96K76 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC20.64■□□□□ 0.89
USP47Q96K76 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USP47Q96K76 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP47Q96K76 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP47Q96K76 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC20.64■□□□□ 0.89
USP47Q96K76 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USP47Q96K76 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
USP47Q96K76 AC004899.1-201ENST00000424687 1714 ntBASIC20.64■□□□□ 0.89
USP47Q96K76 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP47Q96K76 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP47Q96K76 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
USP47Q96K76 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP47Q96K76 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC20.63■□□□□ 0.89
USP47Q96K76 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC20.63■□□□□ 0.89
USP47Q96K76 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP47Q96K76 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
USP47Q96K76 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP47Q96K76 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC20.63■□□□□ 0.89
USP47Q96K76 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP47Q96K76 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP47Q96K76 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP47Q96K76 GPAA1P2-201ENST00000417923 928 ntBASIC20.63■□□□□ 0.89
USP47Q96K76 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP47Q96K76 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC20.63■□□□□ 0.89
USP47Q96K76 AC044849.1-201ENST00000519737 1188 ntBASIC20.63■□□□□ 0.89
USP47Q96K76 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC20.63■□□□□ 0.89
USP47Q96K76 AL023803.2-201ENST00000620080 638 ntBASIC20.63■□□□□ 0.89
USP47Q96K76 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
USP47Q96K76 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP47Q96K76 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC20.63■□□□□ 0.89
USP47Q96K76 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP47Q96K76 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP47Q96K76 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP47Q96K76 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP47Q96K76 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP47Q96K76 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP47Q96K76 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
USP47Q96K76 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP47Q96K76 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC20.63■□□□□ 0.89
USP47Q96K76 FAM45BP-202ENST00000592932 1624 ntBASIC20.63■□□□□ 0.89
USP47Q96K76 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP47Q96K76 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
USP47Q96K76 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
USP47Q96K76 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP47Q96K76 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms