Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 AC087499.5-201ENST00000452760 1342 ntBASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 FES-203ENST00000394302 2133 ntTSL 5 BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 AL079307.3-201ENST00000556114 283 ntBASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 MST1P2-201ENST00000457982 2291 ntBASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
DEPDC4Q8N2C3 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 RBM39-205ENST00000397370 612 ntTSL 2 BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 PMCHL1-203ENST00000423301 697 ntTSL 1 (best) BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 AL355994.1-201ENST00000424379 260 ntBASIC14□□□□□ -0.17
DEPDC4Q8N2C3 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 LINC02560-201ENST00000596379 459 ntBASIC14□□□□□ -0.17
DEPDC4Q8N2C3 AC004233.3-201ENST00000607794 1269 ntBASIC14□□□□□ -0.17
DEPDC4Q8N2C3 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
DEPDC4Q8N2C3 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms