Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC13.37□□□□□ -0.27
SCN1BQ07699 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 PCDHA5-203ENST00000614258 4248 ntBASIC13.37□□□□□ -0.27
SCN1BQ07699 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC13.37□□□□□ -0.27
SCN1BQ07699 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 CDC45-205ENST00000437685 2072 ntTSL 2 BASIC13.37□□□□□ -0.27
SCN1BQ07699 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
SCN1BQ07699 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC13.37□□□□□ -0.27
SCN1BQ07699 MTND6P24-201ENST00000440466 518 ntBASIC13.37□□□□□ -0.27
SCN1BQ07699 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC13.37□□□□□ -0.27
SCN1BQ07699 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC13.37□□□□□ -0.27
SCN1BQ07699 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC13.37□□□□□ -0.27
SCN1BQ07699 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC13.37□□□□□ -0.27
SCN1BQ07699 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
SCN1BQ07699 AC092865.5-201ENST00000545435 363 ntBASIC13.37□□□□□ -0.27
SCN1BQ07699 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC13.37□□□□□ -0.27
SCN1BQ07699 COQ9-214ENST00000567933 882 ntTSL 3 BASIC13.37□□□□□ -0.27
SCN1BQ07699 SPIB-207ENST00000597855 564 ntTSL 4 BASIC13.37□□□□□ -0.27
SCN1BQ07699 AC018529.1-201ENST00000613063 361 ntBASIC13.37□□□□□ -0.27
SCN1BQ07699 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
SCN1BQ07699 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
SCN1BQ07699 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC13.37□□□□□ -0.27
SCN1BQ07699 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC13.37□□□□□ -0.27
SCN1BQ07699 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC13.37□□□□□ -0.27
SCN1BQ07699 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 PCDHGA3-201ENST00000253812 4771 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 ARMC5-201ENST00000268314 3612 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
SCN1BQ07699 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
SCN1BQ07699 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 COG6-202ENST00000416691 5257 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
SCN1BQ07699 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC13.37□□□□□ -0.27
SCN1BQ07699 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 INSRR-201ENST00000368195 5101 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
SCN1BQ07699 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 SLC22A23-202ENST00000380302 2883 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC13.37□□□□□ -0.27
SCN1BQ07699 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC13.37□□□□□ -0.27
SCN1BQ07699 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 DRD2-201ENST00000346454 2433 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SCN1BQ07699 C2-206ENST00000442278 2434 ntTSL 2 BASIC13.37□□□□□ -0.27
SCN1BQ07699 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC13.36□□□□□ -0.27
SCN1BQ07699 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
SCN1BQ07699 CES1P1-201ENST00000421606 1704 ntBASIC13.36□□□□□ -0.27
SCN1BQ07699 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC13.36□□□□□ -0.27
SCN1BQ07699 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SCN1BQ07699 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
SCN1BQ07699 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SCN1BQ07699 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
SCN1BQ07699 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
SCN1BQ07699 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC13.36□□□□□ -0.27
SCN1BQ07699 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SCN1BQ07699 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
SCN1BQ07699 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SCN1BQ07699 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC13.36□□□□□ -0.27
SCN1BQ07699 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
SCN1BQ07699 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC13.36□□□□□ -0.27
SCN1BQ07699 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SCN1BQ07699 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
SCN1BQ07699 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SCN1BQ07699 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SCN1BQ07699 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SCN1BQ07699 BX842568.4-201ENST00000421222 227 ntBASIC13.36□□□□□ -0.27
SCN1BQ07699 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC13.36□□□□□ -0.27
SCN1BQ07699 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SCN1BQ07699 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC13.36□□□□□ -0.27
SCN1BQ07699 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC13.36□□□□□ -0.27
SCN1BQ07699 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC13.36□□□□□ -0.27
SCN1BQ07699 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC13.36□□□□□ -0.27
SCN1BQ07699 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC13.36□□□□□ -0.27
SCN1BQ07699 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC13.36□□□□□ -0.27
SCN1BQ07699 AC004835.2-201ENST00000603762 682 ntBASIC13.36□□□□□ -0.27
SCN1BQ07699 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC13.36□□□□□ -0.27
SCN1BQ07699 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SCN1BQ07699 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC13.36□□□□□ -0.27
SCN1BQ07699 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC13.36□□□□□ -0.27
SCN1BQ07699 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SCN1BQ07699 UBFD1-207ENST00000567212 4727 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
SCN1BQ07699 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
SCN1BQ07699 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC13.36□□□□□ -0.27
SCN1BQ07699 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SCN1BQ07699 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SCN1BQ07699 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SCN1BQ07699 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms