Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A4P53420 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A4P53420 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A4P53420 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A4P53420 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC15.5■□□□□ 0.07
COL4A4P53420 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
COL4A4P53420 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A4P53420 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A4P53420 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A4P53420 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A4P53420 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC15.5■□□□□ 0.07
COL4A4P53420 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC15.5■□□□□ 0.07
COL4A4P53420 MIR645-201ENST00000385283 94 ntBASIC15.5■□□□□ 0.07
COL4A4P53420 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC15.5■□□□□ 0.07
COL4A4P53420 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A4P53420 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC15.5■□□□□ 0.07
COL4A4P53420 AC106047.2-201ENST00000511723 743 ntBASIC15.5■□□□□ 0.07
COL4A4P53420 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
COL4A4P53420 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
COL4A4P53420 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC15.5■□□□□ 0.07
COL4A4P53420 AL451007.2-201ENST00000632004 563 ntBASIC15.5■□□□□ 0.07
COL4A4P53420 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A4P53420 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A4P53420 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.5■□□□□ 0.07
COL4A4P53420 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A4P53420 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC15.5■□□□□ 0.07
COL4A4P53420 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC15.5■□□□□ 0.07
COL4A4P53420 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC15.49■□□□□ 0.07
COL4A4P53420 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL4A4P53420 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
COL4A4P53420 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC15.49■□□□□ 0.07
COL4A4P53420 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL4A4P53420 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL4A4P53420 AC011270.2-201ENST00000624293 2550 ntBASIC15.49■□□□□ 0.07
COL4A4P53420 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC15.49■□□□□ 0.07
COL4A4P53420 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL4A4P53420 FABP5P3-202ENST00000477993 1027 ntTSL 5 BASIC15.49■□□□□ 0.07
COL4A4P53420 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC15.49■□□□□ 0.07
COL4A4P53420 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
COL4A4P53420 TRMT112P3-201ENST00000580149 358 ntBASIC15.49■□□□□ 0.07
COL4A4P53420 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL4A4P53420 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
COL4A4P53420 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.49■□□□□ 0.07
COL4A4P53420 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL4A4P53420 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC15.49■□□□□ 0.07
COL4A4P53420 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL4A4P53420 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC15.49■□□□□ 0.07
COL4A4P53420 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC15.49■□□□□ 0.07
COL4A4P53420 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC15.49■□□□□ 0.07
COL4A4P53420 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC15.49■□□□□ 0.07
COL4A4P53420 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL4A4P53420 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.49■□□□□ 0.07
COL4A4P53420 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
COL4A4P53420 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC15.49■□□□□ 0.07
COL4A4P53420 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
COL4A4P53420 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
COL4A4P53420 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC15.48■□□□□ 0.07
COL4A4P53420 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL4A4P53420 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
COL4A4P53420 PYY2-201ENST00000315776 282 ntBASIC15.48■□□□□ 0.07
COL4A4P53420 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC15.48■□□□□ 0.07
COL4A4P53420 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL4A4P53420 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL4A4P53420 RHEB-207ENST00000496004 744 ntTSL 2 BASIC15.48■□□□□ 0.07
COL4A4P53420 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC15.48■□□□□ 0.07
COL4A4P53420 CD164-210ENST00000512821 964 ntTSL 2 BASIC15.48■□□□□ 0.07
COL4A4P53420 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC15.48■□□□□ 0.07
COL4A4P53420 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC15.48■□□□□ 0.07
COL4A4P53420 USB1-205ENST00000561743 1135 ntTSL 3 BASIC15.48■□□□□ 0.07
COL4A4P53420 AC002472.4-201ENST00000641915 272 ntBASIC15.48■□□□□ 0.07
COL4A4P53420 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC15.48■□□□□ 0.07
COL4A4P53420 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
COL4A4P53420 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL4A4P53420 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL4A4P53420 FAM45BP-202ENST00000592932 1624 ntBASIC15.48■□□□□ 0.07
COL4A4P53420 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
COL4A4P53420 AC103702.1-201ENST00000548801 2630 ntBASIC15.48■□□□□ 0.07
COL4A4P53420 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC15.48■□□□□ 0.07
COL4A4P53420 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL4A4P53420 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
COL4A4P53420 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL4A4P53420 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC15.48■□□□□ 0.07
COL4A4P53420 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
COL4A4P53420 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL4A4P53420 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL4A4P53420 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC15.48■□□□□ 0.07
COL4A4P53420 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC15.48■□□□□ 0.07
COL4A4P53420 IGHVIII-5-2-201ENST00000522505 261 ntBASIC15.48■□□□□ 0.07
COL4A4P53420 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
COL4A4P53420 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
COL4A4P53420 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC15.48■□□□□ 0.07
COL4A4P53420 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC15.48■□□□□ 0.07
COL4A4P53420 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL4A4P53420 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC15.47■□□□□ 0.07
COL4A4P53420 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
COL4A4P53420 API5-208ENST00000531273 1868 ntTSL 2 BASIC15.47■□□□□ 0.07
COL4A4P53420 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL4A4P53420 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC15.47■□□□□ 0.07
COL4A4P53420 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL4A4P53420 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC15.47■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms