Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC12.07□□□□□ -0.48
HMGB3O15347 AC096734.2-201ENST00000562054 433 ntBASIC12.07□□□□□ -0.48
HMGB3O15347 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC12.07□□□□□ -0.48
HMGB3O15347 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC12.07□□□□□ -0.48
HMGB3O15347 PRR29-207ENST00000580752 458 ntTSL 3 BASIC12.07□□□□□ -0.48
HMGB3O15347 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC12.07□□□□□ -0.48
HMGB3O15347 TP73-AS1-207ENST00000624167 988 ntBASIC12.07□□□□□ -0.48
HMGB3O15347 AC007064.4-201ENST00000637740 555 ntBASIC12.07□□□□□ -0.48
HMGB3O15347 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC12.07□□□□□ -0.48
HMGB3O15347 NRAP-203ENST00000369358 5534 ntAPPRIS ALT1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 HPSE-201ENST00000311412 4615 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 AHI1-201ENST00000265602 4335 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC12.07□□□□□ -0.48
HMGB3O15347 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC12.07□□□□□ -0.48
HMGB3O15347 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC12.07□□□□□ -0.48
HMGB3O15347 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC12.07□□□□□ -0.48
HMGB3O15347 KIAA1614-201ENST00000367587 3309 ntTSL 2 BASIC12.07□□□□□ -0.48
HMGB3O15347 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
HMGB3O15347 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
HMGB3O15347 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
HMGB3O15347 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
HMGB3O15347 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 SRD5A1-201ENST00000274192 7132 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC12.07□□□□□ -0.48
HMGB3O15347 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC12.07□□□□□ -0.48
HMGB3O15347 AC023090.2-201ENST00000625182 2110 ntBASIC12.07□□□□□ -0.48
HMGB3O15347 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC12.07□□□□□ -0.48
HMGB3O15347 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 MMP14-201ENST00000311852 3732 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HMGB3O15347 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC12.06□□□□□ -0.48
HMGB3O15347 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC12.06□□□□□ -0.48
HMGB3O15347 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC12.06□□□□□ -0.48
HMGB3O15347 PARP15-205ENST00000483793 4439 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 TBC1D16-201ENST00000310924 10936 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC12.06□□□□□ -0.48
HMGB3O15347 ZFYVE26-201ENST00000347230 9675 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 GMEB2-201ENST00000266068 4559 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
HMGB3O15347 MEF2C-209ENST00000504921 7561 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC12.06□□□□□ -0.48
HMGB3O15347 AC025580.3-201ENST00000617932 1424 ntBASIC12.06□□□□□ -0.48
HMGB3O15347 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 RB1-201ENST00000267163 4840 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC12.06□□□□□ -0.48
HMGB3O15347 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC12.06□□□□□ -0.48
HMGB3O15347 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC12.06□□□□□ -0.48
HMGB3O15347 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC12.06□□□□□ -0.48
HMGB3O15347 AZGP1P1-201ENST00000411909 902 ntBASIC12.06□□□□□ -0.48
HMGB3O15347 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 GHSR-202ENST00000427970 912 ntBASIC12.06□□□□□ -0.48
HMGB3O15347 HCG4P8-203ENST00000443049 980 ntBASIC12.06□□□□□ -0.48
HMGB3O15347 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC12.06□□□□□ -0.48
HMGB3O15347 HCG4B-203ENST00000450128 991 ntBASIC12.06□□□□□ -0.48
HMGB3O15347 AL139010.1-201ENST00000454878 894 ntBASIC12.06□□□□□ -0.48
HMGB3O15347 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC12.06□□□□□ -0.48
HMGB3O15347 SKP2-204ENST00000508514 821 ntTSL 3 BASIC12.06□□□□□ -0.48
HMGB3O15347 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
HMGB3O15347 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC12.06□□□□□ -0.48
HMGB3O15347 IFNL4P1-201ENST00000607083 540 ntBASIC12.06□□□□□ -0.48
HMGB3O15347 MED16-214ENST00000617672 554 ntTSL 5 BASIC12.06□□□□□ -0.48
HMGB3O15347 AL161645.1-201ENST00000622716 1255 ntBASIC12.06□□□□□ -0.48
HMGB3O15347 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC12.06□□□□□ -0.48
HMGB3O15347 MBNL1-AS1-202ENST00000608395 6585 ntTSL 2 BASIC12.06□□□□□ -0.48
HMGB3O15347 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
HMGB3O15347 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC12.06□□□□□ -0.48
HMGB3O15347 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC12.06□□□□□ -0.48
HMGB3O15347 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC12.06□□□□□ -0.48
HMGB3O15347 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 NSD2-212ENST00000503128 8568 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 FURIN-206ENST00000610579 4191 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
HMGB3O15347 FBLIM1-203ENST00000375771 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
HMGB3O15347 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
HMGB3O15347 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC12.06□□□□□ -0.48
HMGB3O15347 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 CHD4-211ENST00000544484 6554 ntTSL 2 BASIC12.06□□□□□ -0.48
HMGB3O15347 VPS52-212ENST00000445902 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 132.6 ms