Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC24.69■■□□□ 1.54
CUX2O14529 AC090616.6-203ENST00000579186 1945 ntBASIC24.69■■□□□ 1.54
CUX2O14529 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CUX2O14529 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC24.69■■□□□ 1.54
CUX2O14529 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CUX2O14529 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CUX2O14529 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC24.69■■□□□ 1.54
CUX2O14529 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC24.69■■□□□ 1.54
CUX2O14529 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC24.69■■□□□ 1.54
CUX2O14529 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CUX2O14529 TAMM41-201ENST00000273037 1297 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CUX2O14529 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CUX2O14529 DAP3-201ENST00000343043 1649 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CUX2O14529 OR2T27-201ENST00000344889 954 ntAPPRIS P1 BASIC24.69■■□□□ 1.54
CUX2O14529 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CUX2O14529 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC24.69■■□□□ 1.54
CUX2O14529 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC24.69■■□□□ 1.54
CUX2O14529 NME2-201ENST00000393183 568 ntTSL 2 BASIC24.69■■□□□ 1.54
CUX2O14529 TEX33-203ENST00000405091 1149 ntAPPRIS ALT2 TSL 5 BASIC24.69■■□□□ 1.54
CUX2O14529 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC24.69■■□□□ 1.54
CUX2O14529 LILRP1-201ENST00000444199 1370 ntBASIC24.69■■□□□ 1.54
CUX2O14529 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CUX2O14529 HNF4A-206ENST00000457232 1339 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CUX2O14529 LINC02199-201ENST00000506655 2702 ntBASIC24.69■■□□□ 1.54
CUX2O14529 NAP1L1-226ENST00000552342 1526 ntTSL 5 BASIC24.69■■□□□ 1.54
CUX2O14529 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC24.69■■□□□ 1.54
CUX2O14529 AC008555.6-201ENST00000605047 458 ntTSL 2 BASIC24.69■■□□□ 1.54
CUX2O14529 AC084018.2-201ENST00000613093 2607 ntBASIC24.69■■□□□ 1.54
CUX2O14529 AC079779.4-201ENST00000619113 548 ntTSL 5 BASIC24.69■■□□□ 1.54
CUX2O14529 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC24.68■■□□□ 1.54
CUX2O14529 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CUX2O14529 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CUX2O14529 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC24.68■■□□□ 1.54
CUX2O14529 AC023090.2-201ENST00000625182 2110 ntBASIC24.68■■□□□ 1.54
CUX2O14529 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC24.68■■□□□ 1.54
CUX2O14529 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC24.68■■□□□ 1.54
CUX2O14529 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
CUX2O14529 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CUX2O14529 AC007952.5-201ENST00000572818 1486 ntBASIC24.68■■□□□ 1.54
CUX2O14529 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC24.68■■□□□ 1.54
CUX2O14529 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC24.68■■□□□ 1.54
CUX2O14529 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
CUX2O14529 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CUX2O14529 MIR339-201ENST00000362153 94 ntBASIC24.68■■□□□ 1.54
CUX2O14529 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC24.68■■□□□ 1.54
CUX2O14529 CYCS-203ENST00000409764 799 ntAPPRIS P1 TSL 3 BASIC24.68■■□□□ 1.54
CUX2O14529 FDPSP7-201ENST00000429043 1054 ntBASIC24.68■■□□□ 1.54
CUX2O14529 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC24.68■■□□□ 1.54
CUX2O14529 AC103563.2-201ENST00000442200 597 ntTSL 5 BASIC24.68■■□□□ 1.54
CUX2O14529 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC24.68■■□□□ 1.54
CUX2O14529 RRNAD1-204ENST00000476229 1096 ntTSL 5 BASIC24.68■■□□□ 1.54
CUX2O14529 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC24.68■■□□□ 1.54
CUX2O14529 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC24.68■■□□□ 1.54
CUX2O14529 SHBG-217ENST00000576478 639 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
CUX2O14529 URAHP-205ENST00000610227 398 ntBASIC24.68■■□□□ 1.54
CUX2O14529 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC24.68■■□□□ 1.54
CUX2O14529 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
CUX2O14529 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC24.68■■□□□ 1.54
CUX2O14529 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CUX2O14529 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CUX2O14529 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CUX2O14529 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC24.67■■□□□ 1.54
CUX2O14529 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC24.67■■□□□ 1.54
CUX2O14529 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CUX2O14529 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC24.67■■□□□ 1.54
CUX2O14529 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CUX2O14529 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC24.67■■□□□ 1.54
CUX2O14529 OR6S1-201ENST00000320704 996 ntAPPRIS P1 BASIC24.67■■□□□ 1.54
CUX2O14529 PPM1N-203ENST00000396737 872 ntTSL 2 BASIC24.67■■□□□ 1.54
CUX2O14529 NAT9-204ENST00000578822 839 ntTSL 3 BASIC24.67■■□□□ 1.54
CUX2O14529 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC24.67■■□□□ 1.54
CUX2O14529 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC24.67■■□□□ 1.54
CUX2O14529 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
CUX2O14529 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CUX2O14529 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC24.67■■□□□ 1.54
CUX2O14529 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC24.66■■□□□ 1.54
CUX2O14529 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CUX2O14529 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC24.66■■□□□ 1.54
CUX2O14529 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
CUX2O14529 JTB-202ENST00000356648 1040 ntTSL 2 BASIC24.66■■□□□ 1.54
CUX2O14529 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
CUX2O14529 SNORD3B-1-201ENST00000577988 758 ntBASIC24.66■■□□□ 1.54
CUX2O14529 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC24.66■■□□□ 1.54
CUX2O14529 IFITM2-205ENST00000602569 605 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
CUX2O14529 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
CUX2O14529 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC24.66■■□□□ 1.54
CUX2O14529 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC24.66■■□□□ 1.54
CUX2O14529 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC24.66■■□□□ 1.54
CUX2O14529 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
CUX2O14529 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC24.66■■□□□ 1.54
CUX2O14529 AC013726.1-201ENST00000563747 2285 ntBASIC24.66■■□□□ 1.54
CUX2O14529 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC24.66■■□□□ 1.54
CUX2O14529 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC24.66■■□□□ 1.54
CUX2O14529 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC24.66■■□□□ 1.54
CUX2O14529 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC24.66■■□□□ 1.54
CUX2O14529 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC24.66■■□□□ 1.54
CUX2O14529 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC24.65■■□□□ 1.54
CUX2O14529 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CUX2O14529 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CUX2O14529 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC24.65■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms