Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.41■□□□□ 0.86
CLCF1Q9UBD9 AC019069.1-201ENST00000610008 1333 ntBASIC20.41■□□□□ 0.86
CLCF1Q9UBD9 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLCF1Q9UBD9 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLCF1Q9UBD9 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
CLCF1Q9UBD9 AC142381.3-201ENST00000568208 1670 ntBASIC20.41■□□□□ 0.86
CLCF1Q9UBD9 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLCF1Q9UBD9 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLCF1Q9UBD9 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CLCF1Q9UBD9 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLCF1Q9UBD9 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CLCF1Q9UBD9 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLCF1Q9UBD9 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLCF1Q9UBD9 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLCF1Q9UBD9 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLCF1Q9UBD9 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLCF1Q9UBD9 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC20.4■□□□□ 0.86
CLCF1Q9UBD9 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
CLCF1Q9UBD9 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CLCF1Q9UBD9 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
CLCF1Q9UBD9 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CLCF1Q9UBD9 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CLCF1Q9UBD9 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC20.39■□□□□ 0.85
CLCF1Q9UBD9 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.39■□□□□ 0.85
CLCF1Q9UBD9 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CLCF1Q9UBD9 AC110285.6-201ENST00000617652 491 ntBASIC20.39■□□□□ 0.85
CLCF1Q9UBD9 SHF-207ENST00000560540 2062 ntTSL 5 BASIC20.39■□□□□ 0.85
CLCF1Q9UBD9 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.39■□□□□ 0.85
CLCF1Q9UBD9 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLCF1Q9UBD9 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
CLCF1Q9UBD9 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLCF1Q9UBD9 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
CLCF1Q9UBD9 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLCF1Q9UBD9 MIR638-201ENST00000385237 100 ntBASIC20.38■□□□□ 0.85
CLCF1Q9UBD9 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CLCF1Q9UBD9 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CLCF1Q9UBD9 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.38■□□□□ 0.85
CLCF1Q9UBD9 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CLCF1Q9UBD9 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
CLCF1Q9UBD9 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
CLCF1Q9UBD9 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLCF1Q9UBD9 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CLCF1Q9UBD9 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CLCF1Q9UBD9 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.37■□□□□ 0.85
CLCF1Q9UBD9 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLCF1Q9UBD9 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
CLCF1Q9UBD9 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.37■□□□□ 0.85
CLCF1Q9UBD9 AC096631.2-201ENST00000436136 790 ntBASIC20.37■□□□□ 0.85
CLCF1Q9UBD9 SRD5A1P1-201ENST00000442297 786 ntBASIC20.37■□□□□ 0.85
CLCF1Q9UBD9 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.37■□□□□ 0.85
CLCF1Q9UBD9 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.37■□□□□ 0.85
CLCF1Q9UBD9 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLCF1Q9UBD9 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CLCF1Q9UBD9 AC138932.3-201ENST00000567634 1902 ntBASIC20.37■□□□□ 0.85
CLCF1Q9UBD9 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.36■□□□□ 0.85
CLCF1Q9UBD9 MED17-227ENST00000640521 2047 ntTSL 5 BASIC20.36■□□□□ 0.85
CLCF1Q9UBD9 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CLCF1Q9UBD9 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.36■□□□□ 0.85
CLCF1Q9UBD9 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CLCF1Q9UBD9 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CLCF1Q9UBD9 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.36■□□□□ 0.85
CLCF1Q9UBD9 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CLCF1Q9UBD9 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.36■□□□□ 0.85
CLCF1Q9UBD9 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.35■□□□□ 0.85
CLCF1Q9UBD9 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CLCF1Q9UBD9 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLCF1Q9UBD9 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
CLCF1Q9UBD9 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
CLCF1Q9UBD9 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
CLCF1Q9UBD9 AC020928.2-201ENST00000588717 2197 ntBASIC20.35■□□□□ 0.85
CLCF1Q9UBD9 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLCF1Q9UBD9 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CLCF1Q9UBD9 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLCF1Q9UBD9 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CLCF1Q9UBD9 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.34■□□□□ 0.85
CLCF1Q9UBD9 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CLCF1Q9UBD9 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CLCF1Q9UBD9 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLCF1Q9UBD9 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC20.34■□□□□ 0.85
CLCF1Q9UBD9 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLCF1Q9UBD9 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC20.34■□□□□ 0.85
CLCF1Q9UBD9 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
CLCF1Q9UBD9 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CLCF1Q9UBD9 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
CLCF1Q9UBD9 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CLCF1Q9UBD9 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CLCF1Q9UBD9 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
CLCF1Q9UBD9 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CLCF1Q9UBD9 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
CLCF1Q9UBD9 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
CLCF1Q9UBD9 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CLCF1Q9UBD9 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.33■□□□□ 0.84
CLCF1Q9UBD9 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.33■□□□□ 0.84
CLCF1Q9UBD9 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CLCF1Q9UBD9 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CLCF1Q9UBD9 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CLCF1Q9UBD9 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLCF1Q9UBD9 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC20.32■□□□□ 0.84
CLCF1Q9UBD9 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLCF1Q9UBD9 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms