Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
CLN6Q9NWW5 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CLN6Q9NWW5 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CLN6Q9NWW5 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CLN6Q9NWW5 LINC00565-201ENST00000562710 2331 ntBASIC20.81■□□□□ 0.92
CLN6Q9NWW5 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLN6Q9NWW5 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CLN6Q9NWW5 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLN6Q9NWW5 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.8■□□□□ 0.92
CLN6Q9NWW5 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLN6Q9NWW5 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CLN6Q9NWW5 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CLN6Q9NWW5 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
CLN6Q9NWW5 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CLN6Q9NWW5 RP9P-202ENST00000450133 1212 ntBASIC20.8■□□□□ 0.92
CLN6Q9NWW5 ECEL1P2-201ENST00000461596 1295 ntBASIC20.8■□□□□ 0.92
CLN6Q9NWW5 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
CLN6Q9NWW5 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
CLN6Q9NWW5 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLN6Q9NWW5 DUSP8P3-201ENST00000399571 1760 ntBASIC20.8■□□□□ 0.92
CLN6Q9NWW5 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.79■□□□□ 0.92
CLN6Q9NWW5 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLN6Q9NWW5 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CLN6Q9NWW5 TPT1-202ENST00000379055 948 ntTSL 2 BASIC20.79■□□□□ 0.92
CLN6Q9NWW5 KRT18P10-201ENST00000388836 1287 ntBASIC20.79■□□□□ 0.92
CLN6Q9NWW5 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC20.79■□□□□ 0.92
CLN6Q9NWW5 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLN6Q9NWW5 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLN6Q9NWW5 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
CLN6Q9NWW5 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.79■□□□□ 0.92
CLN6Q9NWW5 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.79■□□□□ 0.92
CLN6Q9NWW5 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
CLN6Q9NWW5 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLN6Q9NWW5 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CLN6Q9NWW5 AC092068.2-201ENST00000590491 1708 ntBASIC20.78■□□□□ 0.92
CLN6Q9NWW5 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
CLN6Q9NWW5 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CLN6Q9NWW5 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC20.78■□□□□ 0.92
CLN6Q9NWW5 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC20.78■□□□□ 0.92
CLN6Q9NWW5 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.78■□□□□ 0.92
CLN6Q9NWW5 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
CLN6Q9NWW5 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
CLN6Q9NWW5 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLN6Q9NWW5 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLN6Q9NWW5 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLN6Q9NWW5 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLN6Q9NWW5 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CLN6Q9NWW5 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC20.77■□□□□ 0.92
CLN6Q9NWW5 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CLN6Q9NWW5 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLN6Q9NWW5 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
CLN6Q9NWW5 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLN6Q9NWW5 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLN6Q9NWW5 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLN6Q9NWW5 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.77■□□□□ 0.92
CLN6Q9NWW5 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC20.77■□□□□ 0.91
CLN6Q9NWW5 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CLN6Q9NWW5 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.91
CLN6Q9NWW5 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
CLN6Q9NWW5 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.76■□□□□ 0.91
CLN6Q9NWW5 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC20.76■□□□□ 0.91
CLN6Q9NWW5 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
CLN6Q9NWW5 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLN6Q9NWW5 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLN6Q9NWW5 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC20.76■□□□□ 0.91
CLN6Q9NWW5 AC093536.1-201ENST00000569153 554 ntBASIC20.76■□□□□ 0.91
CLN6Q9NWW5 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLN6Q9NWW5 C1orf229-201ENST00000623686 2258 ntBASIC20.76■□□□□ 0.91
CLN6Q9NWW5 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLN6Q9NWW5 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLN6Q9NWW5 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
CLN6Q9NWW5 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLN6Q9NWW5 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC20.76■□□□□ 0.91
CLN6Q9NWW5 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CLN6Q9NWW5 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLN6Q9NWW5 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLN6Q9NWW5 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLN6Q9NWW5 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CLN6Q9NWW5 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
CLN6Q9NWW5 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CLN6Q9NWW5 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLN6Q9NWW5 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLN6Q9NWW5 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLN6Q9NWW5 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
CLN6Q9NWW5 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CLN6Q9NWW5 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.74■□□□□ 0.91
CLN6Q9NWW5 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLN6Q9NWW5 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC20.74■□□□□ 0.91
CLN6Q9NWW5 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.74■□□□□ 0.91
CLN6Q9NWW5 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLN6Q9NWW5 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLN6Q9NWW5 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLN6Q9NWW5 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLN6Q9NWW5 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLN6Q9NWW5 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CLN6Q9NWW5 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLN6Q9NWW5 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC20.73■□□□□ 0.91
CLN6Q9NWW5 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC20.73■□□□□ 0.91
CLN6Q9NWW5 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLN6Q9NWW5 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms