Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
EBF3Q9H4W6 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC23.81■■□□□ 1.4
EBF3Q9H4W6 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
EBF3Q9H4W6 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
EBF3Q9H4W6 AC005703.6-201ENST00000623265 1329 ntBASIC23.81■■□□□ 1.4
EBF3Q9H4W6 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC23.81■■□□□ 1.4
EBF3Q9H4W6 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC23.8■■□□□ 1.4
EBF3Q9H4W6 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC23.8■■□□□ 1.4
EBF3Q9H4W6 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
EBF3Q9H4W6 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
EBF3Q9H4W6 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
EBF3Q9H4W6 EBPL-204ENST00000378272 766 ntTSL 3 BASIC23.8■■□□□ 1.4
EBF3Q9H4W6 AC142381.2-201ENST00000566120 298 ntBASIC23.8■■□□□ 1.4
EBF3Q9H4W6 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
EBF3Q9H4W6 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC23.8■■□□□ 1.4
EBF3Q9H4W6 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
EBF3Q9H4W6 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
EBF3Q9H4W6 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC23.79■■□□□ 1.4
EBF3Q9H4W6 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
EBF3Q9H4W6 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
EBF3Q9H4W6 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
EBF3Q9H4W6 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
EBF3Q9H4W6 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
EBF3Q9H4W6 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC23.79■■□□□ 1.4
EBF3Q9H4W6 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
EBF3Q9H4W6 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC23.79■■□□□ 1.4
EBF3Q9H4W6 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
EBF3Q9H4W6 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
EBF3Q9H4W6 AC135279.3-201ENST00000610945 1311 ntBASIC23.79■■□□□ 1.4
EBF3Q9H4W6 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
EBF3Q9H4W6 GATM-206ENST00000558336 1522 ntTSL 2 BASIC23.79■■□□□ 1.4
EBF3Q9H4W6 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
EBF3Q9H4W6 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
EBF3Q9H4W6 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
EBF3Q9H4W6 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC23.78■■□□□ 1.4
EBF3Q9H4W6 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC23.78■■□□□ 1.4
EBF3Q9H4W6 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
EBF3Q9H4W6 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
EBF3Q9H4W6 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
EBF3Q9H4W6 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC23.78■■□□□ 1.4
EBF3Q9H4W6 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
EBF3Q9H4W6 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
EBF3Q9H4W6 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
EBF3Q9H4W6 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
EBF3Q9H4W6 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
EBF3Q9H4W6 GUK1-205ENST00000366722 850 ntTSL 3 BASIC23.77■■□□□ 1.4
EBF3Q9H4W6 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
EBF3Q9H4W6 ZNRF2P3-201ENST00000424200 374 ntBASIC23.77■■□□□ 1.4
EBF3Q9H4W6 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC23.77■■□□□ 1.4
EBF3Q9H4W6 AC131274.2-201ENST00000580697 1507 ntBASIC23.77■■□□□ 1.4
EBF3Q9H4W6 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC23.76■■□□□ 1.39
EBF3Q9H4W6 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
EBF3Q9H4W6 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
EBF3Q9H4W6 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC23.76■■□□□ 1.39
EBF3Q9H4W6 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
EBF3Q9H4W6 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC23.76■■□□□ 1.39
EBF3Q9H4W6 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
EBF3Q9H4W6 AC024257.2-201ENST00000549699 147 ntBASIC23.76■■□□□ 1.39
EBF3Q9H4W6 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
EBF3Q9H4W6 REST-206ENST00000612429 1376 ntTSL 5 BASIC23.76■■□□□ 1.39
EBF3Q9H4W6 REST-207ENST00000616975 1370 ntTSL 5 BASIC23.76■■□□□ 1.39
EBF3Q9H4W6 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
EBF3Q9H4W6 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
EBF3Q9H4W6 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
EBF3Q9H4W6 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
EBF3Q9H4W6 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
EBF3Q9H4W6 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
EBF3Q9H4W6 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
EBF3Q9H4W6 AL031432.3-201ENST00000607698 485 ntBASIC23.75■■□□□ 1.39
EBF3Q9H4W6 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
EBF3Q9H4W6 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
EBF3Q9H4W6 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
EBF3Q9H4W6 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
EBF3Q9H4W6 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
EBF3Q9H4W6 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC23.74■■□□□ 1.39
EBF3Q9H4W6 SUDS3P1-201ENST00000505831 966 ntBASIC23.74■■□□□ 1.39
EBF3Q9H4W6 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
EBF3Q9H4W6 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
EBF3Q9H4W6 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
EBF3Q9H4W6 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC23.74■■□□□ 1.39
EBF3Q9H4W6 THRA-202ENST00000394121 2260 ntTSL 2 BASIC23.73■■□□□ 1.39
EBF3Q9H4W6 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC23.73■■□□□ 1.39
EBF3Q9H4W6 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
EBF3Q9H4W6 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
EBF3Q9H4W6 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
EBF3Q9H4W6 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC23.73■■□□□ 1.39
EBF3Q9H4W6 DUSP8P4-201ENST00000399538 1761 ntBASIC23.73■■□□□ 1.39
EBF3Q9H4W6 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
EBF3Q9H4W6 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
EBF3Q9H4W6 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
EBF3Q9H4W6 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
EBF3Q9H4W6 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC23.72■■□□□ 1.39
EBF3Q9H4W6 CEBPA-AS1-201ENST00000592982 2198 ntBASIC23.72■■□□□ 1.39
EBF3Q9H4W6 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
EBF3Q9H4W6 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC23.71■■□□□ 1.39
EBF3Q9H4W6 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
EBF3Q9H4W6 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
EBF3Q9H4W6 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
EBF3Q9H4W6 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC23.71■■□□□ 1.39
EBF3Q9H4W6 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms