Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTP4A1Q93096 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
PTP4A1Q93096 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTP4A1Q93096 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTP4A1Q93096 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.54■□□□□ 0.88
PTP4A1Q93096 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC20.54■□□□□ 0.88
PTP4A1Q93096 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.54■□□□□ 0.88
PTP4A1Q93096 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
PTP4A1Q93096 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PTP4A1Q93096 IDNK-203ENST00000405990 629 ntTSL 2 BASIC20.54■□□□□ 0.88
PTP4A1Q93096 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTP4A1Q93096 DUX4L9-201ENST00000449051 1259 ntBASIC20.54■□□□□ 0.88
PTP4A1Q93096 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PTP4A1Q93096 MIR6765-201ENST00000614092 87 ntBASIC20.54■□□□□ 0.88
PTP4A1Q93096 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PTP4A1Q93096 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.54■□□□□ 0.88
PTP4A1Q93096 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTP4A1Q93096 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTP4A1Q93096 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
PTP4A1Q93096 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PTP4A1Q93096 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.54■□□□□ 0.88
PTP4A1Q93096 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.54■□□□□ 0.88
PTP4A1Q93096 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTP4A1Q93096 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PTP4A1Q93096 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
PTP4A1Q93096 CD37-213ENST00000598095 1598 ntTSL 2 BASIC20.53■□□□□ 0.88
PTP4A1Q93096 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.53■□□□□ 0.88
PTP4A1Q93096 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
PTP4A1Q93096 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PTP4A1Q93096 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
PTP4A1Q93096 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PTP4A1Q93096 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
PTP4A1Q93096 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
PTP4A1Q93096 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC20.52■□□□□ 0.88
PTP4A1Q93096 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.52■□□□□ 0.88
PTP4A1Q93096 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.87
PTP4A1Q93096 AL161729.1-201ENST00000604104 1402 ntBASIC20.52■□□□□ 0.87
PTP4A1Q93096 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC20.52■□□□□ 0.87
PTP4A1Q93096 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
PTP4A1Q93096 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
PTP4A1Q93096 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
PTP4A1Q93096 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PTP4A1Q93096 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC20.51■□□□□ 0.87
PTP4A1Q93096 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
PTP4A1Q93096 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PTP4A1Q93096 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
PTP4A1Q93096 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.51■□□□□ 0.87
PTP4A1Q93096 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
PTP4A1Q93096 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.5■□□□□ 0.87
PTP4A1Q93096 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PTP4A1Q93096 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
PTP4A1Q93096 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTP4A1Q93096 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
PTP4A1Q93096 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTP4A1Q93096 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
PTP4A1Q93096 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC20.5■□□□□ 0.87
PTP4A1Q93096 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
PTP4A1Q93096 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTP4A1Q93096 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTP4A1Q93096 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.5■□□□□ 0.87
PTP4A1Q93096 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
PTP4A1Q93096 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTP4A1Q93096 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTP4A1Q93096 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTP4A1Q93096 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PTP4A1Q93096 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTP4A1Q93096 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC20.49■□□□□ 0.87
PTP4A1Q93096 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTP4A1Q93096 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTP4A1Q93096 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTP4A1Q93096 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC20.49■□□□□ 0.87
PTP4A1Q93096 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PTP4A1Q93096 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTP4A1Q93096 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.49■□□□□ 0.87
PTP4A1Q93096 AC092068.2-201ENST00000590491 1708 ntBASIC20.49■□□□□ 0.87
PTP4A1Q93096 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PTP4A1Q93096 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTP4A1Q93096 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.48■□□□□ 0.87
PTP4A1Q93096 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTP4A1Q93096 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTP4A1Q93096 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
PTP4A1Q93096 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
PTP4A1Q93096 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTP4A1Q93096 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTP4A1Q93096 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
PTP4A1Q93096 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
PTP4A1Q93096 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTP4A1Q93096 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PTP4A1Q93096 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
PTP4A1Q93096 LONRF2P2-201ENST00000439212 571 ntBASIC20.47■□□□□ 0.87
PTP4A1Q93096 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PTP4A1Q93096 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTP4A1Q93096 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.47■□□□□ 0.87
PTP4A1Q93096 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PTP4A1Q93096 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
PTP4A1Q93096 DUSP8P3-201ENST00000399571 1760 ntBASIC20.46■□□□□ 0.87
PTP4A1Q93096 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTP4A1Q93096 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PTP4A1Q93096 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.46■□□□□ 0.87
PTP4A1Q93096 HYI-210ENST00000486909 905 ntTSL 5 BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 135.1 ms