Protein–RNA interactions for Protein: Q8TBC3

SHKBP1, SH3KBP1-binding protein 1, humanhuman

Predictions only

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1Q8TBC3 REST-207ENST00000616975 1370 ntTSL 5 BASIC24.07■■□□□ 1.44
SHKBP1Q8TBC3 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC24.07■■□□□ 1.44
SHKBP1Q8TBC3 AL031432.3-201ENST00000607698 485 ntBASIC24.07■■□□□ 1.44
SHKBP1Q8TBC3 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC24.07■■□□□ 1.44
SHKBP1Q8TBC3 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
SHKBP1Q8TBC3 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC24.07■■□□□ 1.44
SHKBP1Q8TBC3 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC24.07■■□□□ 1.44
SHKBP1Q8TBC3 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
SHKBP1Q8TBC3 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC24.06■■□□□ 1.44
SHKBP1Q8TBC3 EBPL-204ENST00000378272 766 ntTSL 3 BASIC24.06■■□□□ 1.44
SHKBP1Q8TBC3 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
SHKBP1Q8TBC3 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC24.06■■□□□ 1.44
SHKBP1Q8TBC3 AC135279.3-201ENST00000610945 1311 ntBASIC24.06■■□□□ 1.44
SHKBP1Q8TBC3 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
SHKBP1Q8TBC3 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
SHKBP1Q8TBC3 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
SHKBP1Q8TBC3 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC24.05■■□□□ 1.44
SHKBP1Q8TBC3 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
SHKBP1Q8TBC3 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
SHKBP1Q8TBC3 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC24.05■■□□□ 1.44
SHKBP1Q8TBC3 AC024257.2-201ENST00000549699 147 ntBASIC24.05■■□□□ 1.44
SHKBP1Q8TBC3 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC24.05■■□□□ 1.44
SHKBP1Q8TBC3 AC142381.2-201ENST00000566120 298 ntBASIC24.05■■□□□ 1.44
SHKBP1Q8TBC3 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
SHKBP1Q8TBC3 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC24.05■■□□□ 1.44
SHKBP1Q8TBC3 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
SHKBP1Q8TBC3 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC24.04■■□□□ 1.44
SHKBP1Q8TBC3 CEBPA-AS1-201ENST00000592982 2198 ntBASIC24.04■■□□□ 1.44
SHKBP1Q8TBC3 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
SHKBP1Q8TBC3 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC24.04■■□□□ 1.44
SHKBP1Q8TBC3 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
SHKBP1Q8TBC3 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC24.04■■□□□ 1.44
SHKBP1Q8TBC3 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
SHKBP1Q8TBC3 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
SHKBP1Q8TBC3 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
SHKBP1Q8TBC3 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
SHKBP1Q8TBC3 ZNRF2P3-201ENST00000424200 374 ntBASIC24.03■■□□□ 1.44
SHKBP1Q8TBC3 STK32C-205ENST00000456004 607 ntTSL 2 BASIC24.03■■□□□ 1.44
SHKBP1Q8TBC3 SUDS3P1-201ENST00000505831 966 ntBASIC24.03■■□□□ 1.44
SHKBP1Q8TBC3 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC24.03■■□□□ 1.44
SHKBP1Q8TBC3 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
SHKBP1Q8TBC3 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC24.03■■□□□ 1.44
SHKBP1Q8TBC3 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
SHKBP1Q8TBC3 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
SHKBP1Q8TBC3 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
SHKBP1Q8TBC3 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC24.03■■□□□ 1.44
SHKBP1Q8TBC3 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC24.02■■□□□ 1.44
SHKBP1Q8TBC3 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
SHKBP1Q8TBC3 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC24.02■■□□□ 1.44
SHKBP1Q8TBC3 GUK1-205ENST00000366722 850 ntTSL 3 BASIC24.02■■□□□ 1.44
SHKBP1Q8TBC3 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
SHKBP1Q8TBC3 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
SHKBP1Q8TBC3 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
SHKBP1Q8TBC3 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
SHKBP1Q8TBC3 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC24.01■■□□□ 1.43
SHKBP1Q8TBC3 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
SHKBP1Q8TBC3 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
SHKBP1Q8TBC3 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC24.01■■□□□ 1.43
SHKBP1Q8TBC3 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC24.01■■□□□ 1.43
SHKBP1Q8TBC3 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC24.01■■□□□ 1.43
SHKBP1Q8TBC3 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
SHKBP1Q8TBC3 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
SHKBP1Q8TBC3 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
SHKBP1Q8TBC3 LSR-205ENST00000427250 1606 ntTSL 2 BASIC24■■□□□ 1.43
SHKBP1Q8TBC3 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC24■■□□□ 1.43
SHKBP1Q8TBC3 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC24■■□□□ 1.43
SHKBP1Q8TBC3 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
SHKBP1Q8TBC3 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
SHKBP1Q8TBC3 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SHKBP1Q8TBC3 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SHKBP1Q8TBC3 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SHKBP1Q8TBC3 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
SHKBP1Q8TBC3 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC23.99■■□□□ 1.43
SHKBP1Q8TBC3 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
SHKBP1Q8TBC3 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC23.99■■□□□ 1.43
SHKBP1Q8TBC3 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC23.99■■□□□ 1.43
SHKBP1Q8TBC3 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SHKBP1Q8TBC3 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC23.99■■□□□ 1.43
SHKBP1Q8TBC3 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC23.98■■□□□ 1.43
SHKBP1Q8TBC3 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC23.98■■□□□ 1.43
SHKBP1Q8TBC3 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
SHKBP1Q8TBC3 EDA-201ENST00000338901 1233 ntBASIC23.98■■□□□ 1.43
SHKBP1Q8TBC3 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC23.98■■□□□ 1.43
SHKBP1Q8TBC3 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
SHKBP1Q8TBC3 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SHKBP1Q8TBC3 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SHKBP1Q8TBC3 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
SHKBP1Q8TBC3 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
SHKBP1Q8TBC3 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
SHKBP1Q8TBC3 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
SHKBP1Q8TBC3 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
SHKBP1Q8TBC3 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
SHKBP1Q8TBC3 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC23.97■■□□□ 1.43
SHKBP1Q8TBC3 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
SHKBP1Q8TBC3 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
SHKBP1Q8TBC3 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
SHKBP1Q8TBC3 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
SHKBP1Q8TBC3 AL022069.1-201ENST00000568025 1636 ntBASIC23.96■■□□□ 1.43
SHKBP1Q8TBC3 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
SHKBP1Q8TBC3 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms