Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLRN3Q8NCR9 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLRN3Q8NCR9 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLRN3Q8NCR9 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.29■□□□□ 0.52
CLRN3Q8NCR9 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.28■□□□□ 0.52
CLRN3Q8NCR9 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC18.28■□□□□ 0.52
CLRN3Q8NCR9 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC18.28■□□□□ 0.52
CLRN3Q8NCR9 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLRN3Q8NCR9 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CLRN3Q8NCR9 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLRN3Q8NCR9 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLRN3Q8NCR9 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLRN3Q8NCR9 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLRN3Q8NCR9 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC18.27■□□□□ 0.52
CLRN3Q8NCR9 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLRN3Q8NCR9 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
CLRN3Q8NCR9 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CLRN3Q8NCR9 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CLRN3Q8NCR9 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLRN3Q8NCR9 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLRN3Q8NCR9 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC18.26■□□□□ 0.51
CLRN3Q8NCR9 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC18.26■□□□□ 0.51
CLRN3Q8NCR9 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC18.26■□□□□ 0.51
CLRN3Q8NCR9 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
CLRN3Q8NCR9 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
CLRN3Q8NCR9 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLRN3Q8NCR9 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLRN3Q8NCR9 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLRN3Q8NCR9 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
CLRN3Q8NCR9 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC18.25■□□□□ 0.51
CLRN3Q8NCR9 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLRN3Q8NCR9 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLRN3Q8NCR9 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLRN3Q8NCR9 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLRN3Q8NCR9 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC18.25■□□□□ 0.51
CLRN3Q8NCR9 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
CLRN3Q8NCR9 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CLRN3Q8NCR9 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
CLRN3Q8NCR9 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLRN3Q8NCR9 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
CLRN3Q8NCR9 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CLRN3Q8NCR9 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLRN3Q8NCR9 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CLRN3Q8NCR9 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
CLRN3Q8NCR9 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC18.24■□□□□ 0.51
CLRN3Q8NCR9 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CLRN3Q8NCR9 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC18.24■□□□□ 0.51
CLRN3Q8NCR9 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC18.24■□□□□ 0.51
CLRN3Q8NCR9 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLRN3Q8NCR9 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLRN3Q8NCR9 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CLRN3Q8NCR9 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLRN3Q8NCR9 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CLRN3Q8NCR9 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.24■□□□□ 0.51
CLRN3Q8NCR9 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
CLRN3Q8NCR9 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLRN3Q8NCR9 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLRN3Q8NCR9 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLRN3Q8NCR9 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
CLRN3Q8NCR9 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLRN3Q8NCR9 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC18.23■□□□□ 0.51
CLRN3Q8NCR9 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLRN3Q8NCR9 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC18.23■□□□□ 0.51
CLRN3Q8NCR9 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
CLRN3Q8NCR9 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLRN3Q8NCR9 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CLRN3Q8NCR9 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLRN3Q8NCR9 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC18.23■□□□□ 0.51
CLRN3Q8NCR9 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLRN3Q8NCR9 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLRN3Q8NCR9 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
CLRN3Q8NCR9 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CLRN3Q8NCR9 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC18.22■□□□□ 0.51
CLRN3Q8NCR9 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLRN3Q8NCR9 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLRN3Q8NCR9 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLRN3Q8NCR9 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLRN3Q8NCR9 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
CLRN3Q8NCR9 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLRN3Q8NCR9 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLRN3Q8NCR9 RARG-204ENST00000543726 1779 ntTSL 2 BASIC18.21■□□□□ 0.51
CLRN3Q8NCR9 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.21■□□□□ 0.51
CLRN3Q8NCR9 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLRN3Q8NCR9 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLRN3Q8NCR9 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLRN3Q8NCR9 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
CLRN3Q8NCR9 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLRN3Q8NCR9 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLRN3Q8NCR9 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLRN3Q8NCR9 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLRN3Q8NCR9 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC18.2■□□□□ 0.5
CLRN3Q8NCR9 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLRN3Q8NCR9 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC18.2■□□□□ 0.5
CLRN3Q8NCR9 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLRN3Q8NCR9 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLRN3Q8NCR9 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLRN3Q8NCR9 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC18.2■□□□□ 0.5
CLRN3Q8NCR9 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLRN3Q8NCR9 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC18.19■□□□□ 0.5
CLRN3Q8NCR9 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms