Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
SF3A1Q15459 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SF3A1Q15459 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
SF3A1Q15459 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SF3A1Q15459 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
SF3A1Q15459 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SF3A1Q15459 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
SF3A1Q15459 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC26.3■■□□□ 1.8
SF3A1Q15459 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
SF3A1Q15459 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SF3A1Q15459 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC26.29■■□□□ 1.8
SF3A1Q15459 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC26.29■■□□□ 1.8
SF3A1Q15459 AC010980.1-201ENST00000587192 1142 ntBASIC26.29■■□□□ 1.8
SF3A1Q15459 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC26.29■■□□□ 1.8
SF3A1Q15459 AC133561.1-201ENST00000568600 2415 ntBASIC26.29■■□□□ 1.8
SF3A1Q15459 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC26.29■■□□□ 1.8
SF3A1Q15459 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SF3A1Q15459 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SF3A1Q15459 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
SF3A1Q15459 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
SF3A1Q15459 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
SF3A1Q15459 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC26.28■■□□□ 1.8
SF3A1Q15459 GUK1-208ENST00000366728 842 ntTSL 2 BASIC26.28■■□□□ 1.8
SF3A1Q15459 BEX3-202ENST00000372634 753 ntTSL 2 BASIC26.28■■□□□ 1.8
SF3A1Q15459 AC074183.2-201ENST00000623112 922 ntBASIC26.28■■□□□ 1.8
SF3A1Q15459 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC26.28■■□□□ 1.8
SF3A1Q15459 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
SF3A1Q15459 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SF3A1Q15459 CD37-213ENST00000598095 1598 ntTSL 2 BASIC26.28■■□□□ 1.8
SF3A1Q15459 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SF3A1Q15459 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC26.27■■□□□ 1.8
SF3A1Q15459 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SF3A1Q15459 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC26.27■■□□□ 1.8
SF3A1Q15459 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
SF3A1Q15459 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC26.27■■□□□ 1.8
SF3A1Q15459 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
SF3A1Q15459 GAK-223ENST00000628912 497 ntTSL 5 BASIC26.27■■□□□ 1.8
SF3A1Q15459 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC26.27■■□□□ 1.8
SF3A1Q15459 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SF3A1Q15459 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SF3A1Q15459 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC26.26■■□□□ 1.79
SF3A1Q15459 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC26.26■■□□□ 1.79
SF3A1Q15459 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
SF3A1Q15459 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC26.26■■□□□ 1.79
SF3A1Q15459 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC26.26■■□□□ 1.79
SF3A1Q15459 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
SF3A1Q15459 AC012354.3-201ENST00000623734 483 ntBASIC26.26■■□□□ 1.79
SF3A1Q15459 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC26.25■■□□□ 1.79
SF3A1Q15459 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC26.25■■□□□ 1.79
SF3A1Q15459 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC26.25■■□□□ 1.79
SF3A1Q15459 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
SF3A1Q15459 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
SF3A1Q15459 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
SF3A1Q15459 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
SF3A1Q15459 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC26.25■■□□□ 1.79
SF3A1Q15459 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC26.25■■□□□ 1.79
SF3A1Q15459 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
SF3A1Q15459 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
SF3A1Q15459 AC120024.1-201ENST00000562672 995 ntBASIC26.24■■□□□ 1.79
SF3A1Q15459 AL033527.3-201ENST00000566366 1196 ntBASIC26.24■■□□□ 1.79
SF3A1Q15459 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
SF3A1Q15459 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
SF3A1Q15459 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
SF3A1Q15459 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC26.24■■□□□ 1.79
SF3A1Q15459 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SF3A1Q15459 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC26.23■■□□□ 1.79
SF3A1Q15459 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
SF3A1Q15459 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC26.23■■□□□ 1.79
SF3A1Q15459 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SF3A1Q15459 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC26.23■■□□□ 1.79
SF3A1Q15459 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC26.23■■□□□ 1.79
SF3A1Q15459 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
SF3A1Q15459 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SF3A1Q15459 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
SF3A1Q15459 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC26.23■■□□□ 1.79
SF3A1Q15459 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC26.22■■□□□ 1.79
SF3A1Q15459 AL161729.1-201ENST00000604104 1402 ntBASIC26.22■■□□□ 1.79
SF3A1Q15459 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
SF3A1Q15459 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
SF3A1Q15459 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC26.22■■□□□ 1.79
SF3A1Q15459 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC26.21■■□□□ 1.79
SF3A1Q15459 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
SF3A1Q15459 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
SF3A1Q15459 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC26.21■■□□□ 1.79
SF3A1Q15459 EI24-213ENST00000618552 1747 ntTSL 5 BASIC26.21■■□□□ 1.79
SF3A1Q15459 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
SF3A1Q15459 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
SF3A1Q15459 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC26.21■■□□□ 1.79
SF3A1Q15459 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
SF3A1Q15459 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC26.21■■□□□ 1.79
SF3A1Q15459 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC26.2■■□□□ 1.79
SF3A1Q15459 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
SF3A1Q15459 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC26.2■■□□□ 1.79
SF3A1Q15459 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC26.2■■□□□ 1.79
SF3A1Q15459 AC131274.2-201ENST00000580697 1507 ntBASIC26.2■■□□□ 1.79
SF3A1Q15459 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
SF3A1Q15459 AC068473.5-201ENST00000616428 2072 ntBASIC26.2■■□□□ 1.78
SF3A1Q15459 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC26.2■■□□□ 1.78
SF3A1Q15459 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
SF3A1Q15459 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC26.2■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms