Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
CXCL12P48061 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CXCL12P48061 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC23.08■■□□□ 1.29
CXCL12P48061 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
CXCL12P48061 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.29
CXCL12P48061 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
CXCL12P48061 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CXCL12P48061 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CXCL12P48061 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.28
CXCL12P48061 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
CXCL12P48061 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
CXCL12P48061 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CXCL12P48061 AC006455.2-201ENST00000429931 906 ntBASIC23.07■■□□□ 1.28
CXCL12P48061 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC23.07■■□□□ 1.28
CXCL12P48061 MIR3181-201ENST00000578512 73 ntBASIC23.07■■□□□ 1.28
CXCL12P48061 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC23.07■■□□□ 1.28
CXCL12P48061 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
CXCL12P48061 AC010501.1-201ENST00000606270 1962 ntBASIC23.07■■□□□ 1.28
CXCL12P48061 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CXCL12P48061 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC23.06■■□□□ 1.28
CXCL12P48061 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CXCL12P48061 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC23.06■■□□□ 1.28
CXCL12P48061 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC23.06■■□□□ 1.28
CXCL12P48061 AC009086.3-201ENST00000623486 1008 ntBASIC23.06■■□□□ 1.28
CXCL12P48061 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CXCL12P48061 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CXCL12P48061 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CXCL12P48061 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC23.05■■□□□ 1.28
CXCL12P48061 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
CXCL12P48061 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CXCL12P48061 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CXCL12P48061 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CXCL12P48061 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
CXCL12P48061 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC23.05■■□□□ 1.28
CXCL12P48061 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CXCL12P48061 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
CXCL12P48061 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC23.05■■□□□ 1.28
CXCL12P48061 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CXCL12P48061 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
CXCL12P48061 AL022069.1-201ENST00000568025 1636 ntBASIC23.04■■□□□ 1.28
CXCL12P48061 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CXCL12P48061 HACD1-201ENST00000326961 773 ntTSL 2 BASIC23.04■■□□□ 1.28
CXCL12P48061 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
CXCL12P48061 KRT18P5-201ENST00000436075 1291 ntBASIC23.04■■□□□ 1.28
CXCL12P48061 YBX1P1-201ENST00000445822 960 ntBASIC23.04■■□□□ 1.28
CXCL12P48061 AC126544.1-201ENST00000580842 1059 ntBASIC23.04■■□□□ 1.28
CXCL12P48061 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CXCL12P48061 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
CXCL12P48061 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CXCL12P48061 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
CXCL12P48061 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC23.03■■□□□ 1.28
CXCL12P48061 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC23.03■■□□□ 1.28
CXCL12P48061 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC23.03■■□□□ 1.28
CXCL12P48061 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC23.03■■□□□ 1.28
CXCL12P48061 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CXCL12P48061 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
CXCL12P48061 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC23.02■■□□□ 1.28
CXCL12P48061 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC23.02■■□□□ 1.28
CXCL12P48061 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CXCL12P48061 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
CXCL12P48061 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC23.02■■□□□ 1.28
CXCL12P48061 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CXCL12P48061 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC23.02■■□□□ 1.28
CXCL12P48061 SLC47A1P1-202ENST00000449666 945 ntBASIC23.02■■□□□ 1.28
CXCL12P48061 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CXCL12P48061 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CXCL12P48061 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC23.02■■□□□ 1.28
CXCL12P48061 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC23.02■■□□□ 1.28
CXCL12P48061 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC23.01■■□□□ 1.27
CXCL12P48061 SNX3-202ENST00000349379 890 ntTSL 2 BASIC23.01■■□□□ 1.27
CXCL12P48061 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC23.01■■□□□ 1.27
CXCL12P48061 NME4-202ENST00000382940 766 ntTSL 3 BASIC23.01■■□□□ 1.27
CXCL12P48061 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC23.01■■□□□ 1.27
CXCL12P48061 NME4-211ENST00000620944 1193 ntTSL 2 BASIC23.01■■□□□ 1.27
CXCL12P48061 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CXCL12P48061 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
CXCL12P48061 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
CXCL12P48061 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CXCL12P48061 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC23■■□□□ 1.27
CXCL12P48061 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CXCL12P48061 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CXCL12P48061 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC23■■□□□ 1.27
CXCL12P48061 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC23■■□□□ 1.27
CXCL12P48061 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC23■■□□□ 1.27
CXCL12P48061 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC22.99■■□□□ 1.27
CXCL12P48061 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CXCL12P48061 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
CXCL12P48061 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CXCL12P48061 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC22.99■■□□□ 1.27
CXCL12P48061 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC22.99■■□□□ 1.27
CXCL12P48061 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC22.99■■□□□ 1.27
CXCL12P48061 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
CXCL12P48061 AL031602.1-201ENST00000633169 911 ntBASIC22.99■■□□□ 1.27
CXCL12P48061 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC22.99■■□□□ 1.27
CXCL12P48061 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC22.99■■□□□ 1.27
CXCL12P48061 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC22.99■■□□□ 1.27
CXCL12P48061 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
CXCL12P48061 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CXCL12P48061 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC22.98■■□□□ 1.27
CXCL12P48061 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms