Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC30.78■■■□□ 2.52
COL18A1P39060 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
COL18A1P39060 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC30.78■■■□□ 2.52
COL18A1P39060 AC092803.2-201ENST00000564287 1899 ntBASIC30.78■■■□□ 2.52
COL18A1P39060 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC30.78■■■□□ 2.52
COL18A1P39060 HES6-206ENST00000409574 738 ntTSL 2 BASIC30.78■■■□□ 2.52
COL18A1P39060 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC30.78■■■□□ 2.52
COL18A1P39060 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC30.78■■■□□ 2.52
COL18A1P39060 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC30.77■■■□□ 2.52
COL18A1P39060 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC30.77■■■□□ 2.52
COL18A1P39060 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
COL18A1P39060 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
COL18A1P39060 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC30.77■■■□□ 2.52
COL18A1P39060 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
COL18A1P39060 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
COL18A1P39060 AL031602.1-201ENST00000633169 911 ntBASIC30.77■■■□□ 2.52
COL18A1P39060 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
COL18A1P39060 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC30.76■■■□□ 2.51
COL18A1P39060 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC30.76■■■□□ 2.51
COL18A1P39060 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
COL18A1P39060 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC30.75■■■□□ 2.51
COL18A1P39060 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
COL18A1P39060 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC30.75■■■□□ 2.51
COL18A1P39060 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
COL18A1P39060 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC30.74■■■□□ 2.51
COL18A1P39060 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC30.74■■■□□ 2.51
COL18A1P39060 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
COL18A1P39060 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
COL18A1P39060 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC30.74■■■□□ 2.51
COL18A1P39060 IKBKGP1-201ENST00000612193 1073 ntBASIC30.74■■■□□ 2.51
COL18A1P39060 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
COL18A1P39060 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
COL18A1P39060 NKILA-201ENST00000613231 537 ntTSL 4 BASIC30.73■■■□□ 2.51
COL18A1P39060 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC30.73■■■□□ 2.51
COL18A1P39060 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC30.73■■■□□ 2.51
COL18A1P39060 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
COL18A1P39060 AC241377.3-202ENST00000626088 1088 ntBASIC30.72■■■□□ 2.51
COL18A1P39060 AC241585.3-202ENST00000628937 1088 ntBASIC30.72■■■□□ 2.51
COL18A1P39060 AC245100.8-202ENST00000629247 1058 ntBASIC30.72■■■□□ 2.51
COL18A1P39060 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
COL18A1P39060 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
COL18A1P39060 SP2-202ENST00000613139 908 ntTSL 5 BASIC30.71■■■□□ 2.51
COL18A1P39060 SLC6A10P-202ENST00000431994 2058 ntBASIC30.71■■■□□ 2.51
COL18A1P39060 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC30.71■■■□□ 2.51
COL18A1P39060 BX842568.3-201ENST00000418104 571 ntBASIC30.71■■■□□ 2.51
COL18A1P39060 KRT18P5-201ENST00000436075 1291 ntBASIC30.71■■■□□ 2.51
COL18A1P39060 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC30.71■■■□□ 2.51
COL18A1P39060 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
COL18A1P39060 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC30.7■■■□□ 2.51
COL18A1P39060 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
COL18A1P39060 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC30.69■■■□□ 2.5
COL18A1P39060 AC034268.1-201ENST00000441047 882 ntBASIC30.69■■■□□ 2.5
COL18A1P39060 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC30.69■■■□□ 2.5
COL18A1P39060 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
COL18A1P39060 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC30.69■■■□□ 2.5
COL18A1P39060 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC30.69■■■□□ 2.5
COL18A1P39060 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC30.69■■■□□ 2.5
COL18A1P39060 AC090192.1-201ENST00000517740 490 ntBASIC30.69■■■□□ 2.5
COL18A1P39060 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC30.69■■■□□ 2.5
COL18A1P39060 AC233992.3-201ENST00000607491 485 ntBASIC30.69■■■□□ 2.5
COL18A1P39060 MPST-208ENST00000628507 698 ntTSL 5 BASIC30.69■■■□□ 2.5
COL18A1P39060 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC30.69■■■□□ 2.5
COL18A1P39060 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC30.68■■■□□ 2.5
COL18A1P39060 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC30.68■■■□□ 2.5
COL18A1P39060 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC30.68■■■□□ 2.5
COL18A1P39060 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC30.68■■■□□ 2.5
COL18A1P39060 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
COL18A1P39060 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
COL18A1P39060 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
COL18A1P39060 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
COL18A1P39060 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC30.67■■■□□ 2.5
COL18A1P39060 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
COL18A1P39060 CD37-213ENST00000598095 1598 ntTSL 2 BASIC30.67■■■□□ 2.5
COL18A1P39060 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
COL18A1P39060 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
COL18A1P39060 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
COL18A1P39060 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC30.66■■■□□ 2.5
COL18A1P39060 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
COL18A1P39060 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC30.66■■■□□ 2.5
COL18A1P39060 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC30.65■■■□□ 2.5
COL18A1P39060 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC30.65■■■□□ 2.5
COL18A1P39060 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
COL18A1P39060 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC30.65■■■□□ 2.5
COL18A1P39060 AC092437.1-201ENST00000624794 1048 ntBASIC30.65■■■□□ 2.5
COL18A1P39060 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC30.64■■■□□ 2.5
COL18A1P39060 GLI3-203ENST00000437480 451 ntTSL 2 BASIC30.64■■■□□ 2.5
COL18A1P39060 SLC47A1P1-202ENST00000449666 945 ntBASIC30.64■■■□□ 2.5
COL18A1P39060 MIR3181-201ENST00000578512 73 ntBASIC30.64■■■□□ 2.5
COL18A1P39060 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC30.64■■■□□ 2.5
COL18A1P39060 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
COL18A1P39060 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC30.64■■■□□ 2.5
COL18A1P39060 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
COL18A1P39060 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC30.64■■■□□ 2.5
COL18A1P39060 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
COL18A1P39060 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC30.63■■■□□ 2.49
COL18A1P39060 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC30.63■■■□□ 2.49
COL18A1P39060 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
COL18A1P39060 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC30.63■■■□□ 2.49
COL18A1P39060 AC027612.3-201ENST00000413684 1047 ntBASIC30.63■■■□□ 2.49
COL18A1P39060 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC30.63■■■□□ 2.49
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms