Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DMBP28068 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DMBP28068 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DMBP28068 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC17.37■□□□□ 0.37
HLA-DMBP28068 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC17.37■□□□□ 0.37
HLA-DMBP28068 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DMBP28068 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DMBP28068 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DMBP28068 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DMBP28068 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DMBP28068 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DMBP28068 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
HLA-DMBP28068 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DMBP28068 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DMBP28068 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC17.36■□□□□ 0.37
HLA-DMBP28068 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
HLA-DMBP28068 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DMBP28068 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
HLA-DMBP28068 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DMBP28068 BHLHE23-202ENST00000612929 1109 ntBASIC17.36■□□□□ 0.37
HLA-DMBP28068 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DMBP28068 AC012676.1-201ENST00000574705 1949 ntBASIC17.36■□□□□ 0.37
HLA-DMBP28068 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DMBP28068 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC17.36■□□□□ 0.37
HLA-DMBP28068 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DMBP28068 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DMBP28068 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DMBP28068 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DMBP28068 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DMBP28068 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DMBP28068 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
HLA-DMBP28068 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DMBP28068 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DMBP28068 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DMBP28068 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
HLA-DMBP28068 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DMBP28068 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DMBP28068 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DMBP28068 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DMBP28068 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC17.35■□□□□ 0.37
HLA-DMBP28068 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC17.35■□□□□ 0.37
HLA-DMBP28068 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
HLA-DMBP28068 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DMBP28068 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DMBP28068 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DMBP28068 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
HLA-DMBP28068 LONRF2P2-201ENST00000439212 571 ntBASIC17.34■□□□□ 0.37
HLA-DMBP28068 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC17.34■□□□□ 0.37
HLA-DMBP28068 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC17.34■□□□□ 0.37
HLA-DMBP28068 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DMBP28068 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DMBP28068 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
HLA-DMBP28068 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC17.34■□□□□ 0.37
HLA-DMBP28068 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DMBP28068 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
HLA-DMBP28068 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
HLA-DMBP28068 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC17.33■□□□□ 0.37
HLA-DMBP28068 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
HLA-DMBP28068 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HLA-DMBP28068 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HLA-DMBP28068 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
HLA-DMBP28068 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HLA-DMBP28068 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HLA-DMBP28068 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC17.33■□□□□ 0.36
HLA-DMBP28068 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
HLA-DMBP28068 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HLA-DMBP28068 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC17.33■□□□□ 0.36
HLA-DMBP28068 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
HLA-DMBP28068 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DMBP28068 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DMBP28068 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
HLA-DMBP28068 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DMBP28068 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DMBP28068 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DMBP28068 AC139795.1-202ENST00000500444 432 ntBASIC17.32■□□□□ 0.36
HLA-DMBP28068 SSSCA1-AS1-201ENST00000567594 614 ntBASIC17.32■□□□□ 0.36
HLA-DMBP28068 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DMBP28068 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DMBP28068 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DMBP28068 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
HLA-DMBP28068 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC17.32■□□□□ 0.36
HLA-DMBP28068 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DMBP28068 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
HLA-DMBP28068 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DMBP28068 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC17.31■□□□□ 0.36
HLA-DMBP28068 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DMBP28068 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DMBP28068 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DMBP28068 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DMBP28068 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC17.31■□□□□ 0.36
HLA-DMBP28068 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DMBP28068 HYI-210ENST00000486909 905 ntTSL 5 BASIC17.31■□□□□ 0.36
HLA-DMBP28068 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DMBP28068 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DMBP28068 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DMBP28068 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
HLA-DMBP28068 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC17.31■□□□□ 0.36
HLA-DMBP28068 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DMBP28068 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC17.3■□□□□ 0.36
HLA-DMBP28068 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms