Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
USF1P22415 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC19.3■□□□□ 0.68
USF1P22415 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USF1P22415 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USF1P22415 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
USF1P22415 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
USF1P22415 AC005703.6-201ENST00000623265 1329 ntBASIC19.29■□□□□ 0.68
USF1P22415 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
USF1P22415 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC19.29■□□□□ 0.68
USF1P22415 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USF1P22415 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USF1P22415 CEBPA-AS1-201ENST00000592982 2198 ntBASIC19.29■□□□□ 0.68
USF1P22415 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC19.28■□□□□ 0.68
USF1P22415 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
USF1P22415 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
USF1P22415 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
USF1P22415 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
USF1P22415 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USF1P22415 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC19.28■□□□□ 0.68
USF1P22415 ZNRF2P3-201ENST00000424200 374 ntBASIC19.28■□□□□ 0.68
USF1P22415 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC19.28■□□□□ 0.68
USF1P22415 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC19.28■□□□□ 0.68
USF1P22415 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
USF1P22415 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
USF1P22415 GATM-206ENST00000558336 1522 ntTSL 2 BASIC19.28■□□□□ 0.68
USF1P22415 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC19.28■□□□□ 0.68
USF1P22415 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
USF1P22415 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
USF1P22415 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USF1P22415 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
USF1P22415 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USF1P22415 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USF1P22415 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
USF1P22415 EDA-201ENST00000338901 1233 ntBASIC19.27■□□□□ 0.68
USF1P22415 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
USF1P22415 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USF1P22415 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC19.27■□□□□ 0.68
USF1P22415 AL355001.2-201ENST00000620617 1191 ntBASIC19.27■□□□□ 0.68
USF1P22415 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
USF1P22415 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USF1P22415 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USF1P22415 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
USF1P22415 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USF1P22415 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USF1P22415 SUDS3P1-201ENST00000505831 966 ntBASIC19.26■□□□□ 0.67
USF1P22415 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
USF1P22415 AC024257.2-201ENST00000549699 147 ntBASIC19.26■□□□□ 0.67
USF1P22415 DUX4L19-201ENST00000557448 1267 ntBASIC19.26■□□□□ 0.67
USF1P22415 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC19.26■□□□□ 0.67
USF1P22415 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USF1P22415 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
USF1P22415 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
USF1P22415 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USF1P22415 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
USF1P22415 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
USF1P22415 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC19.25■□□□□ 0.67
USF1P22415 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC19.25■□□□□ 0.67
USF1P22415 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
USF1P22415 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USF1P22415 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
USF1P22415 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
USF1P22415 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USF1P22415 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
USF1P22415 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC19.25■□□□□ 0.67
USF1P22415 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
USF1P22415 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC19.25■□□□□ 0.67
USF1P22415 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
USF1P22415 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USF1P22415 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USF1P22415 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
USF1P22415 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
USF1P22415 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USF1P22415 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USF1P22415 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
USF1P22415 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
USF1P22415 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USF1P22415 AL031432.3-201ENST00000607698 485 ntBASIC19.24■□□□□ 0.67
USF1P22415 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USF1P22415 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC19.24■□□□□ 0.67
USF1P22415 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USF1P22415 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC19.24■□□□□ 0.67
USF1P22415 AC142381.3-201ENST00000568208 1670 ntBASIC19.24■□□□□ 0.67
USF1P22415 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USF1P22415 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USF1P22415 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
USF1P22415 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC19.23■□□□□ 0.67
USF1P22415 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
USF1P22415 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
USF1P22415 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
USF1P22415 AC092171.4-201ENST00000609130 632 ntBASIC19.23■□□□□ 0.67
USF1P22415 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
USF1P22415 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
USF1P22415 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
USF1P22415 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
USF1P22415 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC19.23■□□□□ 0.67
USF1P22415 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC19.22■□□□□ 0.67
USF1P22415 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USF1P22415 HYI-206ENST00000372434 1025 ntTSL 5 BASIC19.22■□□□□ 0.67
USF1P22415 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC19.22■□□□□ 0.67
USF1P22415 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms