Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
APOBP04114 MPST-208ENST00000628507 698 ntTSL 5 BASIC14.56□□□□□ -0.08
APOBP04114 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
APOBP04114 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC14.56□□□□□ -0.08
APOBP04114 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC14.56□□□□□ -0.08
APOBP04114 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
APOBP04114 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
APOBP04114 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
APOBP04114 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
APOBP04114 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
APOBP04114 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
APOBP04114 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC14.56□□□□□ -0.08
APOBP04114 BX842568.3-201ENST00000418104 571 ntBASIC14.55□□□□□ -0.08
APOBP04114 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
APOBP04114 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
APOBP04114 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
APOBP04114 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
APOBP04114 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
APOBP04114 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
APOBP04114 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC14.55□□□□□ -0.08
APOBP04114 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
APOBP04114 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
APOBP04114 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC14.55□□□□□ -0.08
APOBP04114 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
APOBP04114 TK2-208ENST00000545043 1120 ntTSL 2 BASIC14.55□□□□□ -0.08
APOBP04114 MIR3181-201ENST00000578512 73 ntBASIC14.54□□□□□ -0.08
APOBP04114 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
APOBP04114 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC14.54□□□□□ -0.08
APOBP04114 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC14.54□□□□□ -0.08
APOBP04114 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC14.54□□□□□ -0.08
APOBP04114 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC14.54□□□□□ -0.08
APOBP04114 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
APOBP04114 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
APOBP04114 AL358852.1-201ENST00000623174 1268 ntBASIC14.54□□□□□ -0.08
APOBP04114 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC14.53□□□□□ -0.08
APOBP04114 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC14.53□□□□□ -0.08
APOBP04114 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
APOBP04114 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
APOBP04114 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
APOBP04114 KRT18P14-201ENST00000534205 1250 ntBASIC14.53□□□□□ -0.08
APOBP04114 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
APOBP04114 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
APOBP04114 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
APOBP04114 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC14.53□□□□□ -0.08
APOBP04114 VPS53-216ENST00000574029 585 ntTSL 4 BASIC14.53□□□□□ -0.08
APOBP04114 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
APOBP04114 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
APOBP04114 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
APOBP04114 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
APOBP04114 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
APOBP04114 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC14.53□□□□□ -0.08
APOBP04114 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC14.53□□□□□ -0.08
APOBP04114 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
APOBP04114 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC14.52□□□□□ -0.08
APOBP04114 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
APOBP04114 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
APOBP04114 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
APOBP04114 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
APOBP04114 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
APOBP04114 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
APOBP04114 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
APOBP04114 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
APOBP04114 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
APOBP04114 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC14.52□□□□□ -0.09
APOBP04114 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
APOBP04114 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC14.52□□□□□ -0.09
APOBP04114 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC14.52□□□□□ -0.09
APOBP04114 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
APOBP04114 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
APOBP04114 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
APOBP04114 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC14.51□□□□□ -0.09
APOBP04114 AC006015.1-201ENST00000429970 570 ntBASIC14.51□□□□□ -0.09
APOBP04114 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
APOBP04114 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
APOBP04114 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
APOBP04114 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC14.51□□□□□ -0.09
APOBP04114 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC14.51□□□□□ -0.09
APOBP04114 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
APOBP04114 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
APOBP04114 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
APOBP04114 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
APOBP04114 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC14.51□□□□□ -0.09
APOBP04114 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC14.51□□□□□ -0.09
APOBP04114 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC14.51□□□□□ -0.09
APOBP04114 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC14.51□□□□□ -0.09
APOBP04114 ERN1-208ENST00000606895 2068 ntBASIC14.5□□□□□ -0.09
APOBP04114 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC14.5□□□□□ -0.09
APOBP04114 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC14.5□□□□□ -0.09
APOBP04114 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC14.5□□□□□ -0.09
APOBP04114 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
APOBP04114 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
APOBP04114 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
APOBP04114 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC14.5□□□□□ -0.09
APOBP04114 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC14.5□□□□□ -0.09
APOBP04114 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
APOBP04114 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
APOBP04114 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
APOBP04114 MAP2K4P1-201ENST00000438453 1195 ntBASIC14.49□□□□□ -0.09
APOBP04114 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
APOBP04114 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms