Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC17.18■□□□□ 0.34
HLA-DQA1P01909 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC17.18■□□□□ 0.34
HLA-DQA1P01909 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DQA1P01909 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DQA1P01909 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DQA1P01909 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DQA1P01909 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
HLA-DQA1P01909 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
HLA-DQA1P01909 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
HLA-DQA1P01909 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DQA1P01909 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
HLA-DQA1P01909 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DQA1P01909 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
HLA-DQA1P01909 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DQA1P01909 DUX4L29-201ENST00000425409 679 ntBASIC17.16■□□□□ 0.34
HLA-DQA1P01909 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DQA1P01909 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC17.16■□□□□ 0.34
HLA-DQA1P01909 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DQA1P01909 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DQA1P01909 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DQA1P01909 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DQA1P01909 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC17.16■□□□□ 0.34
HLA-DQA1P01909 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC17.15■□□□□ 0.34
HLA-DQA1P01909 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DQA1P01909 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
HLA-DQA1P01909 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DQA1P01909 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DQA1P01909 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DQA1P01909 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
HLA-DQA1P01909 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DQA1P01909 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
HLA-DQA1P01909 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
HLA-DQA1P01909 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DQA1P01909 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DQA1P01909 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DQA1P01909 AL137060.1-201ENST00000618151 2648 ntBASIC17.15■□□□□ 0.34
HLA-DQA1P01909 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
HLA-DQA1P01909 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC17.14■□□□□ 0.34
HLA-DQA1P01909 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
HLA-DQA1P01909 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
HLA-DQA1P01909 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DQA1P01909 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DQA1P01909 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DQA1P01909 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
HLA-DQA1P01909 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DQA1P01909 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DQA1P01909 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DQA1P01909 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DQA1P01909 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
HLA-DQA1P01909 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DQA1P01909 RPS2-210ENST00000530225 765 ntTSL 2 BASIC17.14■□□□□ 0.33
HLA-DQA1P01909 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC17.14■□□□□ 0.33
HLA-DQA1P01909 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DQA1P01909 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC17.14■□□□□ 0.33
HLA-DQA1P01909 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC17.14■□□□□ 0.33
HLA-DQA1P01909 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DQA1P01909 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DQA1P01909 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DQA1P01909 ANOS2P-203ENST00000472227 1816 ntBASIC17.14■□□□□ 0.33
HLA-DQA1P01909 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DQA1P01909 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC17.14■□□□□ 0.33
HLA-DQA1P01909 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DQA1P01909 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DQA1P01909 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
HLA-DQA1P01909 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
HLA-DQA1P01909 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DQA1P01909 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC17.13■□□□□ 0.33
HLA-DQA1P01909 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
HLA-DQA1P01909 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC17.13■□□□□ 0.33
HLA-DQA1P01909 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DQA1P01909 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DQA1P01909 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DQA1P01909 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC17.13■□□□□ 0.33
HLA-DQA1P01909 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DQA1P01909 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DQA1P01909 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DQA1P01909 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DQA1P01909 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DQA1P01909 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HLA-DQA1P01909 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DQA1P01909 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
HLA-DQA1P01909 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DQA1P01909 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
HLA-DQA1P01909 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC17.12■□□□□ 0.33
HLA-DQA1P01909 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC17.12■□□□□ 0.33
HLA-DQA1P01909 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC17.12■□□□□ 0.33
HLA-DQA1P01909 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DQA1P01909 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DQA1P01909 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DQA1P01909 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DQA1P01909 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
HLA-DQA1P01909 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DQA1P01909 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC17.12■□□□□ 0.33
HLA-DQA1P01909 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DQA1P01909 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DQA1P01909 HLA-L-211ENST00000482052 1765 ntBASIC17.12■□□□□ 0.33
HLA-DQA1P01909 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HLA-DQA1P01909 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC17.12■□□□□ 0.33
HLA-DQA1P01909 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HLA-DQA1P01909 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms