Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 LSM7-203ENST00000585409 512 ntTSL 2 BASIC26.61■■□□□ 1.85
CDKL5O76039 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC26.61■■□□□ 1.85
CDKL5O76039 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
CDKL5O76039 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC26.61■■□□□ 1.85
CDKL5O76039 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC26.61■■□□□ 1.85
CDKL5O76039 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC26.61■■□□□ 1.85
CDKL5O76039 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
CDKL5O76039 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC26.6■■□□□ 1.85
CDKL5O76039 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC26.6■■□□□ 1.85
CDKL5O76039 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC26.6■■□□□ 1.85
CDKL5O76039 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC26.6■■□□□ 1.85
CDKL5O76039 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
CDKL5O76039 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC26.59■■□□□ 1.85
CDKL5O76039 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC26.59■■□□□ 1.85
CDKL5O76039 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC26.59■■□□□ 1.85
CDKL5O76039 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
CDKL5O76039 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC26.59■■□□□ 1.85
CDKL5O76039 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
CDKL5O76039 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC26.58■■□□□ 1.85
CDKL5O76039 RARRES2P1-201ENST00000474487 481 ntBASIC26.58■■□□□ 1.85
CDKL5O76039 PRTG-204ENST00000561292 833 ntTSL 3 BASIC26.58■■□□□ 1.85
CDKL5O76039 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC26.58■■□□□ 1.85
CDKL5O76039 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC26.58■■□□□ 1.85
CDKL5O76039 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC26.58■■□□□ 1.84
CDKL5O76039 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC26.57■■□□□ 1.84
CDKL5O76039 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC26.57■■□□□ 1.84
CDKL5O76039 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC26.57■■□□□ 1.84
CDKL5O76039 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC26.57■■□□□ 1.84
CDKL5O76039 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CDKL5O76039 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC26.57■■□□□ 1.84
CDKL5O76039 EI24-204ENST00000527235 1625 ntTSL 5 BASIC26.57■■□□□ 1.84
CDKL5O76039 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CDKL5O76039 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CDKL5O76039 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CDKL5O76039 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC26.56■■□□□ 1.84
CDKL5O76039 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CDKL5O76039 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
CDKL5O76039 TK2-202ENST00000417693 1046 ntTSL 2 BASIC26.56■■□□□ 1.84
CDKL5O76039 BX664725.1-201ENST00000438252 379 ntBASIC26.56■■□□□ 1.84
CDKL5O76039 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC26.56■■□□□ 1.84
CDKL5O76039 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC26.56■■□□□ 1.84
CDKL5O76039 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC26.56■■□□□ 1.84
CDKL5O76039 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC26.55■■□□□ 1.84
CDKL5O76039 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC26.55■■□□□ 1.84
CDKL5O76039 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CDKL5O76039 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CDKL5O76039 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
CDKL5O76039 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC26.55■■□□□ 1.84
CDKL5O76039 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC26.55■■□□□ 1.84
CDKL5O76039 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC26.55■■□□□ 1.84
CDKL5O76039 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CDKL5O76039 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC26.55■■□□□ 1.84
CDKL5O76039 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CDKL5O76039 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CDKL5O76039 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CDKL5O76039 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
CDKL5O76039 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CDKL5O76039 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
CDKL5O76039 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC26.54■■□□□ 1.84
CDKL5O76039 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC26.54■■□□□ 1.84
CDKL5O76039 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC26.54■■□□□ 1.84
CDKL5O76039 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CDKL5O76039 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC26.53■■□□□ 1.84
CDKL5O76039 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
CDKL5O76039 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CDKL5O76039 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CDKL5O76039 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CDKL5O76039 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
CDKL5O76039 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC26.53■■□□□ 1.84
CDKL5O76039 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC26.53■■□□□ 1.84
CDKL5O76039 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
CDKL5O76039 SNX5-217ENST00000606557 1087 ntBASIC26.53■■□□□ 1.84
CDKL5O76039 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CDKL5O76039 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC26.53■■□□□ 1.84
CDKL5O76039 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC26.53■■□□□ 1.84
CDKL5O76039 AC021242.3-201ENST00000607598 1377 ntBASIC26.53■■□□□ 1.84
CDKL5O76039 RARA-203ENST00000394086 2008 ntTSL 2 BASIC26.53■■□□□ 1.84
CDKL5O76039 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC26.53■■□□□ 1.84
CDKL5O76039 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC26.53■■□□□ 1.84
CDKL5O76039 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
CDKL5O76039 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC26.52■■□□□ 1.84
CDKL5O76039 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CDKL5O76039 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CDKL5O76039 RNF146-205ENST00000477776 762 ntTSL 3 BASIC26.52■■□□□ 1.84
CDKL5O76039 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC26.52■■□□□ 1.84
CDKL5O76039 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CDKL5O76039 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CDKL5O76039 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
CDKL5O76039 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC26.51■■□□□ 1.83
CDKL5O76039 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC26.51■■□□□ 1.83
CDKL5O76039 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC26.51■■□□□ 1.83
CDKL5O76039 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
CDKL5O76039 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC26.51■■□□□ 1.83
CDKL5O76039 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC26.51■■□□□ 1.83
CDKL5O76039 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
CDKL5O76039 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
CDKL5O76039 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC26.5■■□□□ 1.83
CDKL5O76039 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
CDKL5O76039 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC26.5■■□□□ 1.83
CDKL5O76039 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC26.5■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms